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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
404843-404967
(+)
FMN
405044-405608 (+)
SUB0410
Riboflavin transporter
SUB0410
Operon
DOOR ID:
528950
SUB0410,
SUB0411,
SUB0412,
SUB0413,
SUB0414,
SUB0415
View Structure
2
562615-562711
(-)
TPP
562013-562562 (-)
SUB0597
Putative membrane protein
SUB0597
Single gene
DOOR ID:
2506365
SUB0597
View Structure
3
579371-579458
(+)
yybP-ykoY
579513-582198 (+)
SUB0614
Cation transporting ATPase
SUB0614
Single gene
DOOR ID:
2506375
SUB0614
View Structure
4
624185-624301
(+)
preQ1-II
624922-626881 (+)
ligA
DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])
SUB0658
Operon
DOOR ID:
529003
SUB0658
(ligA)
,
SUB0659,
SUB0660,
SUB0661
(glgB)
,
SUB0662
(glgC)
,
SUB0663,
SUB0664
(glgA)
,
SUB0665
(glgP)
View Structure
5
844183-844278
(+)
purine
844361-844943 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SUB0866
Operon
DOOR ID:
529050
SUB0866
(xpt)
,
SUB0867
(pbuX)
View Structure
6
962020-962107
(+)
glycine
962231-963557 (+)
SUB0988
Sodium:alanine symporter family protein
SUB0988
Operon
DOOR ID:
529075
SUB0988,
SUB0989
View Structure
7
1244497-1244587
(+)
THF
1244626-1245184 (+)
SUB1256
Putative membrane protein
SUB1256
Single gene
DOOR ID:
2506567
SUB1256
View Structure
Genome:
Streptococcus uberis 0140J
(
NC_012004.1
);
Phylum:
Firmicutes
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