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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
184118-184239
(+)
SAH
184269-187059 (+)
Dtpsy_0165
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Dtpsy_0165
Operon
DOOR ID:
526792
Dtpsy_0165,
Dtpsy_0166
View Structure
2
616936-617017
(+)
SAH
617083-618514 (+)
Dtpsy_0597
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Dtpsy_0597
Single gene
DOOR ID:
2502893
Dtpsy_0597
View Structure
3
1051886-1052130
(+)
cobalamin
1052209-1054090 (+)
Dtpsy_1012
TonB-dependent receptor
Dtpsy_1012
Operon
DOOR ID:
526989
Dtpsy_1012,
Dtpsy_1013,
Dtpsy_1014,
Dtpsy_1015,
Dtpsy_1016,
Dtpsy_1017
View Structure
4
1703724-1703913
(+)
FMN
1704041-1704713 (+)
Dtpsy_1613
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dtpsy_1613
Single gene
DOOR ID:
2503221
Dtpsy_1613
View Structure
5
1849968-1850082
(-)
glycine
1848792-1849923 (-)
Dtpsy_1741
Glycine cleavage system T protein
Dtpsy_1741
Operon
DOOR ID:
527132
Dtpsy_1735,
Dtpsy_1736,
Dtpsy_1737,
Dtpsy_1738,
Dtpsy_1739,
Dtpsy_1740,
Dtpsy_1741
View Structure
6
1850102-1850194
(-)
glycine
1848792-1849923 (-)
Dtpsy_1741
Glycine cleavage system T protein
Dtpsy_1741
Operon
DOOR ID:
527132
Dtpsy_1735,
Dtpsy_1736,
Dtpsy_1737,
Dtpsy_1738,
Dtpsy_1739,
Dtpsy_1740,
Dtpsy_1741
View Structure
7
2070768-2070890
(+)
TPP
2070950-2072075 (+)
Dtpsy_1936
FAD dependent oxidoreductase
Dtpsy_1936
Operon
DOOR ID:
527176
Dtpsy_1936,
Dtpsy_1937
View Structure
8
2188351-2188510
(+)
ZMP-ZTP
2188544-2189789 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Dtpsy_2044
Operon
DOOR ID:
527202
Dtpsy_2044
(glyA)
,
Dtpsy_2045
(nrdR)
View Structure
9
2692456-2692648
(-)
cobalamin
2691649-2692411 (-)
Dtpsy_2528
Cob(II)yrinic acid a;c-diamide reductase
Dtpsy_2528
Single gene
DOOR ID:
2503555
Dtpsy_2528
View Structure
10
3163963-3164072
(-)
TPP
3162016-3163861 (-)
Dtpsy_2971
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dtpsy_2971
Single gene
DOOR ID:
2503705
Dtpsy_2971
View Structure
11
3375724-3375835
(+)
glycine
3375928-3377239 (+)
Dtpsy_3159
D-amino-acid dehydrogenase
Dtpsy_3159
Single gene
DOOR ID:
2503761
Dtpsy_3159
View Structure
12
3736689-3736818
(-)
yybP-ykoY
3736007-3736586 (-)
Dtpsy_3484
Dtpsy_3484
Single gene
DOOR ID:
2503867
Dtpsy_3484
View Structure
Genome:
Acidovorax ebreus TPSY
(
NC_011992.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"184118-184239";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"184269-187059";i:10;s:1:"+";i:11;s:10:"Dtpsy_0165";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:10:"Dtpsy_0165";i:14;s:6:"Operon";i:15;s:6:"526792";i:16;s:21:"Dtpsy_0165;Dtpsy_0166";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"616936-617017";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"617083-618514";i:10;s:1:"+";i:11;s:10:"Dtpsy_0597";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Dtpsy_0597";i:14;s:11:"Single gene";i:15;s:7:"2502893";i:16;s:10:"Dtpsy_0597";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1051886-1052130";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1052209-1054090";i:10;s:1:"+";i:11;s:10:"Dtpsy_1012";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Dtpsy_1012";i:14;s:6:"Operon";i:15;s:6:"526989";i:16;s:65:"Dtpsy_1012;Dtpsy_1013;Dtpsy_1014;Dtpsy_1015;Dtpsy_1016;Dtpsy_1017";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1703724-1703913";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1704041-1704713";i:10;s:1:"+";i:11;s:10:"Dtpsy_1613";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Dtpsy_1613";i:14;s:11:"Single gene";i:15;s:7:"2503221";i:16;s:10:"Dtpsy_1613";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1849968-1850082";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1848792-1849923";i:10;s:1:"-";i:11;s:10:"Dtpsy_1741";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Dtpsy_1741";i:14;s:6:"Operon";i:15;s:6:"527132";i:16;s:76:"Dtpsy_1735;Dtpsy_1736;Dtpsy_1737;Dtpsy_1738;Dtpsy_1739;Dtpsy_1740;Dtpsy_1741";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1850102-1850194";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1848792-1849923";i:10;s:1:"-";i:11;s:10:"Dtpsy_1741";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Dtpsy_1741";i:14;s:6:"Operon";i:15;s:6:"527132";i:16;s:76:"Dtpsy_1735;Dtpsy_1736;Dtpsy_1737;Dtpsy_1738;Dtpsy_1739;Dtpsy_1740;Dtpsy_1741";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2070768-2070890";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2070950-2072075";i:10;s:1:"+";i:11;s:10:"Dtpsy_1936";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:10:"Dtpsy_1936";i:14;s:6:"Operon";i:15;s:6:"527176";i:16;s:21:"Dtpsy_1936;Dtpsy_1937";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2188351-2188510";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2188544-2189789";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"Dtpsy_2044";i:14;s:6:"Operon";i:15;s:6:"527202";i:16;s:33:"Dtpsy_2044(glyA);Dtpsy_2045(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2692456-2692648";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2691649-2692411";i:10;s:1:"-";i:11;s:10:"Dtpsy_2528";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:10:"Dtpsy_2528";i:14;s:11:"Single gene";i:15;s:7:"2503555";i:16;s:10:"Dtpsy_2528";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3163963-3164072";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3162016-3163861";i:10;s:1:"-";i:11;s:10:"Dtpsy_2971";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Dtpsy_2971";i:14;s:11:"Single gene";i:15;s:7:"2503705";i:16;s:10:"Dtpsy_2971";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3375724-3375835";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3375928-3377239";i:10;s:1:"+";i:11;s:10:"Dtpsy_3159";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:10:"Dtpsy_3159";i:14;s:11:"Single gene";i:15;s:7:"2503761";i:16;s:10:"Dtpsy_3159";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011992.1";i:2;s:23:"Acidovorax ebreus TPSY ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3736689-3736818";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3736007-3736586";i:10;s:1:"-";i:11;s:10:"Dtpsy_3484";i:12;s:0:"";i:13;s:10:"Dtpsy_3484";i:14;s:11:"Single gene";i:15;s:7:"2503867";i:16;s:10:"Dtpsy_3484";i:17;s:0:"";i:18;s:15:"View Structure ";}}
