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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
319817-319899
(+)
ZMP-ZTP
319921-320566 (+)
Arad_0370
Amino acid efflux protein
Arad_0370
Single gene
DOOR ID:
2498802
Arad_0370
View Structure
2
642241-642319
(-)
sam-alpha
641011-642196 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Arad_0780
Single gene
DOOR ID:
2498962
Arad_0780
(metZ)
View Structure
3
956006-956210
(+)
cobalamin
956364-957552 (+)
Arad_1180
Ring hydroxylating dioxygenase alpha-subunit
Arad_1180
Operon
DOOR ID:
525253
Arad_1180,
Arad_1182
View Structure
4
1993758-1993841
(+)
glycine
1994059-1995130 (+)
gcvT
Glycine cleavage system T protein
Arad_2525
Operon
DOOR ID:
525440
Arad_2525
(gcvT)
,
Arad_2526
(gcvH)
,
Arad_2527
(gcvP)
View Structure
5
1993845-1993922
(+)
glycine
1994059-1995130 (+)
gcvT
Glycine cleavage system T protein
Arad_2525
Operon
DOOR ID:
525440
Arad_2525
(gcvT)
,
Arad_2526
(gcvH)
,
Arad_2527
(gcvP)
View Structure
6
2220436-2220839
(-)
cobalamin
2219770-2220295 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Arad_2800
Operon
DOOR ID:
525479
Arad_2795
(cobO)
,
Arad_2796,
Arad_2797
(cobN)
,
Arad_2799
(cobW)
,
Arad_2800
(cobU)
View Structure
7
2430019-2430165
(+)
FMN
2430254-2430731 (+)
ribH2
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Arad_3053
Single gene
DOOR ID:
2499766
Arad_3053
(ribH2)
View Structure
8
2724415-2724502
(-)
fluoride
2722951-2724298 (-)
Arad_3398
Chloride channel protein
Arad_3398
Single gene
DOOR ID:
2499926
Arad_3398
View Structure
9
3729653-3729730
(+)
sam-alpha
3729780-3730707 (+)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Arad_4643
Operon
DOOR ID:
525743
Arad_4643
(metA)
,
Arad_4644
View Structure
10
3747965-3748081
(+)
TPP
3748130-3749159 (+)
tbpA
ABC transporter; substrate binding protein
Arad_4663
Operon
DOOR ID:
525747
Arad_4663
(tbpA)
,
Arad_4664
(thiP)
,
Arad_4665
(thiQ)
View Structure
Genome:
Agrobacterium radiobacter K84 chromosome I
(
NC_011985.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"956006-956210";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"956364-957552";i:10;s:1:"+";i:11;s:9:"Arad_1180";i:12;s:44:"Ring hydroxylating dioxygenase alpha-subunit";i:13;s:9:"Arad_1180";i:14;s:6:"Operon";i:15;s:6:"525253";i:16;s:19:"Arad_1180;Arad_1182";i:17;s:39:"cellular metabolic process [GO:0044237]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1993758-1993841";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1994059-1995130";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Arad_2525";i:14;s:6:"Operon";i:15;s:6:"525440";i:16;s:47:"Arad_2525(gcvT);Arad_2526(gcvH);Arad_2527(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1993845-1993922";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1994059-1995130";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Arad_2525";i:14;s:6:"Operon";i:15;s:6:"525440";i:16;s:47:"Arad_2525(gcvT);Arad_2526(gcvH);Arad_2527(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2220436-2220839";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2219770-2220295";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:9:"Arad_2800";i:14;s:6:"Operon";i:15;s:6:"525479";i:16;s:73:"Arad_2795(cobO);Arad_2796;Arad_2797(cobN);Arad_2799(cobW);Arad_2800(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2430019-2430165";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2430254-2430731";i:10;s:1:"+";i:11;s:5:"ribH2";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:9:"Arad_3053";i:14;s:11:"Single gene";i:15;s:7:"2499766";i:16;s:16:"Arad_3053(ribH2)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2724415-2724502";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2722951-2724298";i:10;s:1:"-";i:11;s:9:"Arad_3398";i:12;s:24:"Chloride channel protein";i:13;s:9:"Arad_3398";i:14;s:11:"Single gene";i:15;s:7:"2499926";i:16;s:9:"Arad_3398";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3729653-3729730";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3729780-3730707";i:10;s:1:"+";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Arad_4643";i:14;s:6:"Operon";i:15;s:6:"525743";i:16;s:25:"Arad_4643(metA);Arad_4644";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011985.1";i:2;s:42:"Agrobacterium radiobacter K84 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3747965-3748081";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3748130-3749159";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:42:"ABC transporter; substrate binding protein";i:13;s:9:"Arad_4663";i:14;s:6:"Operon";i:15;s:6:"525747";i:16;s:47:"Arad_4663(tbpA);Arad_4664(thiP);Arad_4665(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
