About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
155803-155879
(+)
sam-alpha
155881-157108 (+)
RSKD131_0159
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RSKD131_0159
Operon
DOOR ID:
521625
RSKD131_0157,
RSKD131_0158,
RSKD131_0159
View Structure
2
501583-501674
(+)
glycine
501812-502946 (+)
gcvT
Aminomethyltransferase
RSKD131_0509
Operon
DOOR ID:
521695
RSKD131_0509
(gcvT)
,
RSKD131_0510,
RSKD131_0511
View Structure
3
711650-711850
(+)
cobalamin
711976-713812 (+)
RSKD131_0717
TonB-dependent receptor
RSKD131_0717
Operon
DOOR ID:
521741
RSKD131_0717,
RSKD131_0718,
RSKD131_0719,
RSKD131_0720,
RSKD131_0721
View Structure
4
1147144-1147337
(+)
cobalamin
1147603-1147795 (+)
RSKD131_1133
RSKD131_1133
Operon
DOOR ID:
521823
RSKD131_1133,
RSKD131_1134,
RSKD131_1135
(cobN)
,
RSKD131_1136
(cobH)
,
RSKD131_1137,
RSKD131_1138
View Structure
5
2040515-2040612
(-)
TPP
2039678-2040467 (-)
RSKD131_2006
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
RSKD131_2006
Operon
DOOR ID:
522004
RSKD131_2001,
RSKD131_2002,
RSKD131_2003,
RSKD131_2004,
RSKD131_2005,
RSKD131_2006
View Structure
6
2184130-2184337
(+)
cobalamin
2184423-2184840 (+)
RSKD131_2149
RSKD131_2149
Operon
DOOR ID:
522031
RSKD131_2149,
RSKD131_2150,
RSKD131_2151
View Structure
7
2842464-2842563
(+)
TPP
2843556-2845071 (+)
thiP
Thiamin ABC transporter membrane component
RSKD131_2790
Operon
DOOR ID:
522173
RSKD131_2789
(tbpA)
,
RSKD131_2790
(thiP)
,
RSKD131_2791
View Structure
Genome:
Rhodobacter sphaeroides KD131 chromosome I
(
NC_011963.1
);
Phylum:
Alphaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"155803-155879";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"155881-157108";i:10;s:1:"+";i:11;s:12:"RSKD131_0159";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:12:"RSKD131_0159";i:14;s:6:"Operon";i:15;s:6:"521625";i:16;s:38:"RSKD131_0157;RSKD131_0158;RSKD131_0159";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"501583-501674";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"501812-502946";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:22:"Aminomethyltransferase";i:13;s:12:"RSKD131_0509";i:14;s:6:"Operon";i:15;s:6:"521695";i:16;s:44:"RSKD131_0509(gcvT);RSKD131_0510;RSKD131_0511";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"711650-711850";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"711976-713812";i:10;s:1:"+";i:11;s:12:"RSKD131_0717";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"RSKD131_0717";i:14;s:6:"Operon";i:15;s:6:"521741";i:16;s:64:"RSKD131_0717;RSKD131_0718;RSKD131_0719;RSKD131_0720;RSKD131_0721";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1147144-1147337";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1147603-1147795";i:10;s:1:"+";i:11;s:12:"RSKD131_1133";i:12;s:0:"";i:13;s:12:"RSKD131_1133";i:14;s:6:"Operon";i:15;s:6:"521823";i:16;s:89:"RSKD131_1133;RSKD131_1134;RSKD131_1135(cobN);RSKD131_1136(cobH);RSKD131_1137;RSKD131_1138";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2040515-2040612";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2039678-2040467";i:10;s:1:"-";i:11;s:12:"RSKD131_2006";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:12:"RSKD131_2006";i:14;s:6:"Operon";i:15;s:6:"522004";i:16;s:77:"RSKD131_2001;RSKD131_2002;RSKD131_2003;RSKD131_2004;RSKD131_2005;RSKD131_2006";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2184130-2184337";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2184423-2184840";i:10;s:1:"+";i:11;s:12:"RSKD131_2149";i:12;s:0:"";i:13;s:12:"RSKD131_2149";i:14;s:6:"Operon";i:15;s:6:"522031";i:16;s:38:"RSKD131_2149;RSKD131_2150;RSKD131_2151";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011963.1";i:2;s:42:"Rhodobacter sphaeroides KD131 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2842464-2842563";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2843556-2845071";i:10;s:1:"+";i:11;s:4:"thiP";i:12;s:42:"Thiamin ABC transporter membrane component";i:13;s:12:"RSKD131_2790";i:14;s:6:"Operon";i:15;s:6:"522173";i:16;s:50:"RSKD131_2789(tbpA);RSKD131_2790(thiP);RSKD131_2791";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}}