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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
200250-200385
(-)
cobalamin
198582-200088 (-)
trd_0193
Prenyltransferase and squalene oxidase repeat domain protein
trd_0193
Operon
DOOR ID:
520994
trd_0189,
trd_0190,
trd_0191,
trd_0192,
trd_0193
View Structure
2
371625-371734
(-)
SAM
370373-371618 (-)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
trd_0368
Single gene
DOOR ID:
2491411
trd_0368
(metX)
View Structure
3
398251-398359
(+)
TPP
398444-399278 (+)
thiD
Phosphomethylpyrimidine kinase
trd_0398
Operon
DOOR ID:
521032
trd_0398
(thiD)
,
trd_0399
(thiG)
,
trd_0400
(thiE)
,
trd_0401
(thiE)
,
trd_0402
(thiS)
View Structure
4
498620-498769
(+)
FMN
498858-500007 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
trd_0502
Operon
DOOR ID:
521055
trd_0502
(ribD)
,
trd_0503
(ribE)
,
trd_0504,
trd_0505
(ribH)
View Structure
5
534836-534953
(-)
TPP
534137-534782 (-)
trd_0540
Aminopyrimidine aminohydrolase
trd_0540
Operon
DOOR ID:
521063
trd_0539,
trd_0540
View Structure
6
593158-593274
(-)
TPP
592211-593018 (-)
trd_0599
ABC transporter; ATP-binding protein
trd_0599
Operon
DOOR ID:
521078
trd_0597,
trd_0598,
trd_0599
View Structure
7
733997-734156
(-)
glmS
732047-733859 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
trd_0743
Operon
DOOR ID:
521106
trd_0740,
trd_0741
(rdgB)
,
trd_0742,
trd_0743
(glmS)
View Structure
8
1403534-1403719
(-)
cobalamin
1401091-1403404 (-)
trd_1409
Ribonucleoside-diphosphate reductase
trd_1409
Operon
DOOR ID:
521240
trd_1408
(nrdF)
,
trd_1409
View Structure
9
1996938-1997016
(-)
fluoride
1995653-1996862 (-)
kefB
Kef-type K+ transport systems; membrane components
trd_1977
Operon
DOOR ID:
521355
trd_1972,
trd_1973,
trd_1974,
trd_1975,
trd_1976,
trd_1977
(kefB)
View Structure
Genome:
Thermomicrobium roseum DSM 5159
(
NC_011959.1
);
Phylum:
Chloroflexi
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011959.1";i:2;s:32:"Thermomicrobium roseum DSM 5159 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"593158-593274";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"592211-593018";i:10;s:1:"-";i:11;s:8:"trd_0599";i:12;s:36:"ABC transporter; ATP-binding protein";i:13;s:8:"trd_0599";i:14;s:6:"Operon";i:15;s:6:"521078";i:16;s:26:"trd_0597;trd_0598;trd_0599";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011959.1";i:2;s:32:"Thermomicrobium roseum DSM 5159 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"733997-734156";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"732047-733859";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:62:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing]";i:13;s:8:"trd_0743";i:14;s:6:"Operon";i:15;s:6:"521106";i:16;s:47:"trd_0740;trd_0741(rdgB);trd_0742;trd_0743(glmS)";i:17;s:57:"carbohydrate derivative biosynthetic process [GO:1901137]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011959.1";i:2;s:32:"Thermomicrobium roseum DSM 5159 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1403534-1403719";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1401091-1403404";i:10;s:1:"-";i:11;s:8:"trd_1409";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:8:"trd_1409";i:14;s:6:"Operon";i:15;s:6:"521240";i:16;s:23:"trd_1408(nrdF);trd_1409";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011959.1";i:2;s:32:"Thermomicrobium roseum DSM 5159 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1996938-1997016";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1995653-1996862";i:10;s:1:"-";i:11;s:4:"kefB";i:12;s:50:"Kef-type K+ transport systems; membrane components";i:13;s:8:"trd_1977";i:14;s:6:"Operon";i:15;s:6:"521355";i:16;s:59:"trd_1972;trd_1973;trd_1974;trd_1975;trd_1976;trd_1977(kefB)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
