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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
267614-267827
(-)
cobalamin
266875-267553 (-)
RSKD131_3360
RSKD131_3360
Single gene
DOOR ID:
2490999
RSKD131_3360
View Structure
2
304960-305139
(+)
cobalamin
305183-305876 (+)
RSKD131_3398
Cob(II)yrinic acid a;c-diamide reductase
RSKD131_3398
Single gene
DOOR ID:
2491008
RSKD131_3398
View Structure
3
475763-475963
(-)
cobalamin
474586-475591 (-)
RSKD131_3558
Periplasmic binding protein
RSKD131_3558
Operon
DOOR ID:
520813
RSKD131_3556,
RSKD131_3557,
RSKD131_3558
View Structure
4
703570-703619
(-)
SAM-SAH
702396-703554 (-)
RSKD131_3766
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
RSKD131_3766
Operon
DOOR ID:
520852
RSKD131_3766,
RSKD131_3767
View Structure
5
757492-757539
(+)
mini-ykkC
757587-757875 (+)
RSKD131_3819
RSKD131_3819
Single gene
DOOR ID:
2491145
RSKD131_3819
View Structure
6
759893-759996
(-)
ykkC-yxkD
758972-759845 (-)
RSKD131_3822
RSKD131_3822
Single gene
DOOR ID:
2491148
RSKD131_3822
View Structure
7
1245602-1245790
(+)
cobalamin
1245873-1246257 (+)
RSKD131_4280
RSKD131_4280
Single gene
DOOR ID:
2491301
RSKD131_4280
View Structure
8
1250655-1250868
(-)
cobalamin
1249573-1250578 (-)
RSKD131_4283
Cobyrinate a;c-diamide synthase / hydrogenobyrinic acid a;c-diamide synthase (Glutamine-hydrolysing)
RSKD131_4283
Operon
DOOR ID:
520949
RSKD131_4281,
RSKD131_4282,
RSKD131_4283
View Structure
9
1256299-1256449
(-)
cobalamin
1255665-1255890 (-)
RSKD131_4289
ABC transporter; periplasmic substrate-binding protein
RSKD131_4289
Single gene
DOOR ID:
2491307
RSKD131_4289
View Structure
Genome:
Rhodobacter sphaeroides KD131 chromosome II
(
NC_011958.1
);
Phylum:
Alphaproteobacteria
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