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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
21680-21778
(+)
SAH
21982-22396 (+)
Tgr7_0023
Tgr7_0023
Single gene
DOOR ID:
2488254
Tgr7_0023
View Structure
2
518398-518500
(+)
TPP
518548-520438 (+)
Tgr7_0487
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Tgr7_0487
Single gene
DOOR ID:
2488427
Tgr7_0487
View Structure
3
653458-653682
(+)
cobalamin
653854-654817 (-)
Tgr7_0618
ISRSO18-transposase protein
Tgr7_0618
Single gene
DOOR ID:
2488473
Tgr7_0618
View Structure
4
1219697-1219780
(-)
c-di-GMP-I
1218940-1219696 (-)
Tgr7_1131
Uncharacterized protein
Tgr7_1131
single gene
DOOR ID:
2488672
Tgr7_1131
View Structure
5
1221084-1221167
(-)
c-di-GMP-I
1220189-1221083 (-)
Tgr7_1132
Uncharacterized protein
Tgr7_1132
single gene
DOOR ID:
2488673
Tgr7_1132
View Structure
6
2479059-2479143
(+)
c-di-GMP-I
2479880-2481275 (+)
Tgr7_2354
Uncharacterized protein
Tgr7_2354
single gene
DOOR ID:
2489093
Tgr7_2354
View Structure
7
2789826-2790064
(-)
cobalamin
2787915-2789724 (-)
Tgr7_2648
TonB-dependent receptor
Tgr7_2648
Operon
DOOR ID:
519731
Tgr7_2646,
Tgr7_2647,
Tgr7_2648
View Structure
8
2902030-2902126
(-)
glycine
2900886-2901978 (-)
Tgr7_2759
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tgr7_2759
Single gene
DOOR ID:
2489247
Tgr7_2759
View Structure
9
2902127-2902228
(-)
glycine
2900886-2901978 (-)
Tgr7_2759
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tgr7_2759
Single gene
DOOR ID:
2489247
Tgr7_2759
View Structure
10
3035894-3035975
(+)
SAH
3035993-3037406 (+)
Tgr7_2895
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Tgr7_2895
Single gene
DOOR ID:
2489295
Tgr7_2895
View Structure
11
3208679-3208761
(-)
c-di-GMP-I
3208326-3208677 (-)
Tgr7_3062
Uncharacterized protein
Tgr7_3062
single gene
DOOR ID:
2489356
Tgr7_3062
View Structure
12
3224952-3224998
(+)
mini-ykkC
3225009-3226008 (+)
Tgr7_3079
Tgr7_3079
Operon
DOOR ID:
519823
Tgr7_3079,
Tgr7_3080
View Structure
Genome:
Thioalkalivibrio sulfidophilus HL-EbGr7
(
NC_011901.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"653458-653682";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"653854-654817";i:10;s:1:"-";i:11;s:9:"Tgr7_0618";i:12;s:27:"ISRSO18-transposase protein";i:13;s:9:"Tgr7_0618";i:14;s:11:"Single gene";i:15;s:7:"2488473";i:16;s:9:"Tgr7_0618";i:17;s:40:"transposition; DNA-mediated [GO:0006313]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1219697-1219780";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1218940-1219696";i:10;s:1:"-";i:11;s:9:"Tgr7_1131";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Tgr7_1131";i:14;s:11:"single gene";i:15;s:7:"2488672";i:16;s:9:"Tgr7_1131";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1221084-1221167";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1220189-1221083";i:10;s:1:"-";i:11;s:9:"Tgr7_1132";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Tgr7_1132";i:14;s:11:"single gene";i:15;s:7:"2488673";i:16;s:9:"Tgr7_1132";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2479059-2479143";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2479880-2481275";i:10;s:1:"+";i:11;s:9:"Tgr7_2354";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Tgr7_2354";i:14;s:11:"single gene";i:15;s:7:"2489093";i:16;s:9:"Tgr7_2354";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2789826-2790064";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2787915-2789724";i:10;s:1:"-";i:11;s:9:"Tgr7_2648";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Tgr7_2648";i:14;s:6:"Operon";i:15;s:6:"519731";i:16;s:29:"Tgr7_2646;Tgr7_2647;Tgr7_2648";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2902030-2902126";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2900886-2901978";i:10;s:1:"-";i:11;s:9:"Tgr7_2759";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Tgr7_2759";i:14;s:11:"Single gene";i:15;s:7:"2489247";i:16;s:9:"Tgr7_2759";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2902127-2902228";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2900886-2901978";i:10;s:1:"-";i:11;s:9:"Tgr7_2759";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Tgr7_2759";i:14;s:11:"Single gene";i:15;s:7:"2489247";i:16;s:9:"Tgr7_2759";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3035894-3035975";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3035993-3037406";i:10;s:1:"+";i:11;s:9:"Tgr7_2895";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Tgr7_2895";i:14;s:11:"Single gene";i:15;s:7:"2489295";i:16;s:9:"Tgr7_2895";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3208679-3208761";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3208326-3208677";i:10;s:1:"-";i:11;s:9:"Tgr7_3062";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Tgr7_3062";i:14;s:11:"single gene";i:15;s:7:"2489356";i:16;s:9:"Tgr7_3062";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011901.1";i:2;s:40:"Thioalkalivibrio sulfidophilus HL-EbGr7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3224952-3224998";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3225009-3226008";i:10;s:1:"+";i:11;s:9:"Tgr7_3079";i:12;s:0:"";i:13;s:9:"Tgr7_3079";i:14;s:6:"Operon";i:15;s:6:"519823";i:16;s:19:"Tgr7_3079;Tgr7_3080";i:17;s:0:"";i:18;s:15:"View Structure ";}}
