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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
71606-71705
(+)
THF
71775-72297 (+)
Hore_00610
Signal transduction histidine kinase; LytS
Hore_00610
Single gene
DOOR ID:
2486833
Hore_00610
View Structure
2
161628-161798
(+)
glmS
161830-163657 (+)
Hore_01570
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Hore_01570
Single gene
DOOR ID:
2486853
Hore_01570
View Structure
3
539421-539522
(+)
purine
539624-540926 (+)
Hore_04970
Xanthine/uracil/vitamin C permease
Hore_04970
Single gene
DOOR ID:
2486960
Hore_04970
View Structure
4
769735-769828
(-)
c-di-GMP-I
769236-769722 (-)
Hore_07120
Uncharacterized protein
Hore_07120
single gene
DOOR ID:
2487042
Hore_07120
View Structure
5
769887-769989
(-)
c-di-GMP-I
769236-769722 (-)
Hore_07120
Uncharacterized protein
Hore_07120
single gene
DOOR ID:
2487042
Hore_07120
View Structure
6
1089819-1089940
(+)
FMN
1090116-1091217 (+)
Hore_09990
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Hore_09990
Operon
DOOR ID:
518459
Hore_09990,
Hore_10000,
Hore_10010,
Hore_10020
View Structure
7
1093724-1093833
(+)
TPP
1093895-1094441 (+)
Hore_10030
Putative proton-coupled thiamine transporter YuaJ
Hore_10030
Operon
DOOR ID:
518460
Hore_10030,
Hore_10040
View Structure
8
1255255-1255400
(-)
ydaO-yuaA
1254626-1255250 (-)
Hore_11630
TrkA-C domain protein
Hore_11630
Single gene
DOOR ID:
2487195
Hore_11630
View Structure
9
2029849-2030037
(-)
cobalamin
2028711-2029668 (-)
Hore_18990
Periplasmic binding protein
Hore_18990
Single gene
DOOR ID:
2487438
Hore_18990
View Structure
10
2106474-2106579
(-)
SAM
2103917-2106377 (-)
Hore_19590
Homocysteine S-methyltransferase
Hore_19590
Operon
DOOR ID:
518654
Hore_19560,
Hore_19570,
Hore_19580,
Hore_19590
View Structure
11
2206055-2206138
(-)
c-di-GMP-II
2205507-2206002 (-)
Hore_20440
Hore_20440
Single gene
DOOR ID:
2487490
Hore_20440
View Structure
12
2415768-2415882
(-)
ykkC-yxkD
2414171-2415560 (-)
Hore_22170
Adenylosuccinate lyase (ASL) (Adenylosuccinase)
Hore_22170
Operon
DOOR ID:
518705
Hore_22160,
Hore_22170
View Structure
13
2415866-2415967
(-)
purine
2414171-2415560 (-)
Hore_22170
Adenylosuccinate lyase (ASL) (Adenylosuccinase)
Hore_22170
Operon
DOOR ID:
518705
Hore_22160,
Hore_22170
View Structure
14
2431263-2431377
(-)
SAM
2430118-2431177 (-)
Hore_22300
Methionine import ATP-binding protein MetN
Hore_22300
Operon
DOOR ID:
518708
Hore_22280,
Hore_22290,
Hore_22300
View Structure
15
2532806-2532894
(-)
ZMP-ZTP
2530505-2532725 (-)
Hore_23170
Formate acetyltransferase (4)
Hore_23170
Operon
DOOR ID:
518724
Hore_23160,
Hore_23170
View Structure
16
2563201-2563293
(-)
glycine
2562035-2563109 (-)
Hore_23440
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Hore_23440
Single gene
DOOR ID:
2487603
Hore_23440
View Structure
Genome:
Halothermothrix orenii H 168
(
NC_011899.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"71606-71705";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:11:"71775-72297";i:10;s:1:"+";i:11;s:10:"Hore_00610";i:12;s:42:"Signal transduction histidine kinase; LytS";i:13;s:10:"Hore_00610";i:14;s:11:"Single gene";i:15;s:7:"2486833";i:16;s:10:"Hore_00610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"161628-161798";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"161830-163657";i:10;s:1:"+";i:11;s:10:"Hore_01570";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Hore_01570";i:14;s:11:"Single gene";i:15;s:7:"2486853";i:16;s:10:"Hore_01570";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"539421-539522";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"539624-540926";i:10;s:1:"+";i:11;s:10:"Hore_04970";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:10:"Hore_04970";i:14;s:11:"Single gene";i:15;s:7:"2486960";i:16;s:10:"Hore_04970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"769735-769828";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"769236-769722";i:10;s:1:"-";i:11;s:10:"Hore_07120";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Hore_07120";i:14;s:11:"single gene";i:15;s:7:"2487042";i:16;s:10:"Hore_07120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"769887-769989";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"769236-769722";i:10;s:1:"-";i:11;s:10:"Hore_07120";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Hore_07120";i:14;s:11:"single gene";i:15;s:7:"2487042";i:16;s:10:"Hore_07120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1089819-1089940";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1090116-1091217";i:10;s:1:"+";i:11;s:10:"Hore_09990";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Hore_09990";i:14;s:6:"Operon";i:15;s:6:"518459";i:16;s:43:"Hore_09990;Hore_10000;Hore_10010;Hore_10020";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1093724-1093833";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1093895-1094441";i:10;s:1:"+";i:11;s:10:"Hore_10030";i:12;s:49:"Putative proton-coupled thiamine transporter YuaJ";i:13;s:10:"Hore_10030";i:14;s:6:"Operon";i:15;s:6:"518460";i:16;s:21:"Hore_10030;Hore_10040";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1255255-1255400";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1254626-1255250";i:10;s:1:"-";i:11;s:10:"Hore_11630";i:12;s:21:"TrkA-C domain protein";i:13;s:10:"Hore_11630";i:14;s:11:"Single gene";i:15;s:7:"2487195";i:16;s:10:"Hore_11630";i:17;s:36:"potassium ion transport [GO:0006813]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2029849-2030037";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2028711-2029668";i:10;s:1:"-";i:11;s:10:"Hore_18990";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Hore_18990";i:14;s:11:"Single gene";i:15;s:7:"2487438";i:16;s:10:"Hore_18990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2106474-2106579";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2103917-2106377";i:10;s:1:"-";i:11;s:10:"Hore_19590";i:12;s:32:"Homocysteine S-methyltransferase";i:13;s:10:"Hore_19590";i:14;s:6:"Operon";i:15;s:6:"518654";i:16;s:43:"Hore_19560;Hore_19570;Hore_19580;Hore_19590";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2206055-2206138";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2205507-2206002";i:10;s:1:"-";i:11;s:10:"Hore_20440";i:12;s:0:"";i:13;s:10:"Hore_20440";i:14;s:11:"Single gene";i:15;s:7:"2487490";i:16;s:10:"Hore_20440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2415768-2415882";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:6:"Tandem";i:9;s:15:"2414171-2415560";i:10;s:1:"-";i:11;s:10:"Hore_22170";i:12;s:48:"Adenylosuccinate lyase (ASL) (Adenylosuccinase)";i:13;s:10:"Hore_22170";i:14;s:6:"Operon";i:15;s:6:"518705";i:16;s:21:"Hore_22160;Hore_22170";i:17;s:96:"'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2415866-2415967";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:6:"Tandem";i:9;s:15:"2414171-2415560";i:10;s:1:"-";i:11;s:10:"Hore_22170";i:12;s:48:"Adenylosuccinate lyase (ASL) (Adenylosuccinase)";i:13;s:10:"Hore_22170";i:14;s:6:"Operon";i:15;s:6:"518705";i:16;s:21:"Hore_22160;Hore_22170";i:17;s:96:"'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2431263-2431377";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2430118-2431177";i:10;s:1:"-";i:11;s:10:"Hore_22300";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:10:"Hore_22300";i:14;s:6:"Operon";i:15;s:6:"518708";i:16;s:32:"Hore_22280;Hore_22290;Hore_22300";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2532806-2532894";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2530505-2532725";i:10;s:1:"-";i:11;s:10:"Hore_23170";i:12;s:29:"Formate acetyltransferase (4)";i:13;s:10:"Hore_23170";i:14;s:6:"Operon";i:15;s:6:"518724";i:16;s:21:"Hore_23160;Hore_23170";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_011899.1";i:2;s:29:"Halothermothrix orenii H 168 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2563201-2563293";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2562035-2563109";i:10;s:1:"-";i:11;s:10:"Hore_23440";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"Hore_23440";i:14;s:11:"Single gene";i:15;s:7:"2487603";i:16;s:10:"Hore_23440";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
