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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
144283-144384
(+)
glycine
144616-144919 (+)
Ddes_0111
Ddes_0111
Operon
DOOR ID:
512628
Ddes_0111,
Ddes_0112,
Ddes_0113
View Structure
2
757538-757648
(-)
TPP
756203-757484 (-)
Ddes_0628
Thiamine biosynthesis protein ThiC
Ddes_0628
Single gene
DOOR ID:
2474452
Ddes_0628
View Structure
3
932431-932609
(+)
cobalamin
932979-933870 (+)
Ddes_0796
Transport system permease protein
Ddes_0796
Single gene
DOOR ID:
2474520
Ddes_0796
View Structure
4
1151537-1151626
(-)
glycine
1150855-1151389 (-)
Ddes_0984
Ddes_0984
Single gene
DOOR ID:
2474597
Ddes_0984
View Structure
5
2602715-2602765
(-)
mini-ykkC
2602377-2602692 (-)
Ddes_2158
Ddes_2158
Single gene
DOOR ID:
2475111
Ddes_2158
View Structure
6
2609896-2610025
(+)
TPP
2610135-2610336 (+)
Ddes_2165
Thiamine biosynthesis protein ThiS
Ddes_2165
Single gene
DOOR ID:
2475114
Ddes_2165
View Structure
7
2759842-2759990
(-)
FMN
2759015-2759687 (-)
Ddes_2290
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Ddes_2290
Single gene
DOOR ID:
2475188
Ddes_2290
View Structure
8
2808975-2809198
(+)
cobalamin
2809230-2810145 (+)
Ddes_2334
Sirohydrochlorin cobaltochelatase
Ddes_2334
Single gene
DOOR ID:
2475215
Ddes_2334
View Structure
Genome:
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
(
NC_011883.1
);
Phylum:
delta/epsilon subdivisions
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