About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
466204-466337
(+)
MOCO
467501-467981 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
HAPS_0437
Operon
DOOR ID:
512191
HAPS_0437
(moaC)
,
HAPS_0438
(moaD)
,
HAPS_0439
(moaE)
,
HAPS_0440,
HAPS_0441
View Structure
2
1000724-1000825
(+)
glycine
1000973-1002362 (+)
alsT
Na+/alanine symporter
HAPS_1007
Single gene
DOOR ID:
2473392
HAPS_1007
(alsT)
View Structure
3
1111983-1112152
(+)
lysine
1112280-1113807 (+)
HAPS_1122
Na(+)/H(+) antiporter
HAPS_1122
Single gene
DOOR ID:
2473428
HAPS_1122
View Structure
4
1127498-1127623
(+)
FMN
1127875-1128967 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
HAPS_1134
Operon
DOOR ID:
512326
HAPS_1134
(ribD)
,
HAPS_1135
(ribE)
,
HAPS_1136
(ribA)
View Structure
5
1229687-1229783
(+)
TPP
1229833-1230814 (+)
tbpA
Thiamine-binding periplasmic protein
HAPS_1254
Single gene
DOOR ID:
2473464
HAPS_1254
(tbpA)
View Structure
6
1370564-1370609
(-)
PreQ1
1369901-1370561 (-)
queC
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
HAPS_1387
Operon
DOOR ID:
512382
HAPS_1385
(nrdG)
,
HAPS_1386
(pts)
,
HAPS_1387
(queC)
View Structure
7
1808535-1808627
(-)
TPP
1807556-1808366 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
HAPS_1841
Operon
DOOR ID:
512455
HAPS_1839
(thiE)
,
HAPS_1840
(thiD)
,
HAPS_1841
(thiM)
View Structure
Genome:
Haemophilus parasuis SH0165
(
NC_011852.1
);
Phylum:
Gammaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"466204-466337";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"467501-467981";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"HAPS_0437";i:14;s:6:"Operon";i:15;s:6:"512191";i:16;s:67:"HAPS_0437(moaC);HAPS_0438(moaD);HAPS_0439(moaE);HAPS_0440;HAPS_0441";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1000724-1000825";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1000973-1002362";i:10;s:1:"+";i:11;s:4:"alsT";i:12;s:21:"Na+/alanine symporter";i:13;s:9:"HAPS_1007";i:14;s:11:"Single gene";i:15;s:7:"2473392";i:16;s:15:"HAPS_1007(alsT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1111983-1112152";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1112280-1113807";i:10;s:1:"+";i:11;s:9:"HAPS_1122";i:12;s:21:"Na(+)/H(+) antiporter";i:13;s:9:"HAPS_1122";i:14;s:11:"Single gene";i:15;s:7:"2473428";i:16;s:9:"HAPS_1122";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1127498-1127623";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1127875-1128967";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"HAPS_1134";i:14;s:6:"Operon";i:15;s:6:"512326";i:16;s:47:"HAPS_1134(ribD);HAPS_1135(ribE);HAPS_1136(ribA)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1229687-1229783";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1229833-1230814";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"HAPS_1254";i:14;s:11:"Single gene";i:15;s:7:"2473464";i:16;s:15:"HAPS_1254(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1370564-1370609";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1369901-1370561";i:10;s:1:"-";i:11;s:4:"queC";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"HAPS_1387";i:14;s:6:"Operon";i:15;s:6:"512382";i:16;s:46:"HAPS_1385(nrdG);HAPS_1386(pts);HAPS_1387(queC)";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011852.1";i:2;s:28:"Haemophilus parasuis SH0165 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1808535-1808627";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1807556-1808366";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"HAPS_1841";i:14;s:6:"Operon";i:15;s:6:"512455";i:16;s:47:"HAPS_1839(thiE);HAPS_1840(thiD);HAPS_1841(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
