Genome: Clostridium kluyveri NBRC 12016 (NC_011837.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 244041-244137 (-)TPP243294-243891 (+)CKR_0229

CKR_0229Single gene

DOOR ID: 2471711		CKR_0229 View Structure
2 278931-279064 (-)ydaO-yuaA278404-278929 (-)CKR_0263

CKR_0263Single gene

DOOR ID: 2471725		CKR_0263 View Structure
3 285035-285232 (+)glmS285407-287234 (+)CKR_0268

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CKR_0268Single gene

DOOR ID: 2471727		CKR_0268 View Structure
4 304406-304465 (+)fluoride304541-304985 (+)CKR_0285

Putative fluoride ion transporter CrcB		CKR_0285Operon

DOOR ID: 511473		CKR_0285,
CKR_0286,
CKR_0287		 View Structure
5 391100-391146 (+)PreQ1391238-392255 (+)CKR_0367

CKR_0367Operon

DOOR ID: 511497		CKR_0367,
CKR_0368,
CKR_0369,
CKR_0370		 View Structure
6 503052-503159 (+)SAM503467-503908 (+)CKR_0462

CKR_0462Single gene

DOOR ID: 2471817		CKR_0462 View Structure
7 587321-587493 (+)lysine587722-588922 (+)CKR_0535

Aspartokinase 		CKR_0535Operon

DOOR ID: 511522		CKR_0535,
CKR_0536,
CKR_0537		 View Structure
8 655270-655370 (+)SAM655454-656411 (+)CKR_0590

Methionine import ATP-binding protein MetN 		CKR_0590Operon

DOOR ID: 511536		CKR_0590,
CKR_0591		 View Structure
9 657926-658065 (-)ydaO-yuaA657157-657919 (-)CKR_0592

CKR_0592Single gene

DOOR ID: 2471877		CKR_0592 View Structure
10 769760-769851 (-)glycine769353-769623 (-)CKR_0694

CKR_0694Operon

DOOR ID: 511551		CKR_0693,
CKR_0694		 View Structure
11 818842-818946 (+)SAM819113-819929 (+)CKR_0738

CKR_0738Operon

DOOR ID: 511559		CKR_0738,
CKR_0739,
CKR_0740		 View Structure
12 824755-824862 (+)SAM824922-825147 (+)CKR_0743

CKR_0743Single gene

DOOR ID: 2471951		CKR_0743 View Structure
13 982261-982371 (-)SAM980823-982122 (-)CKR_0879

CKR_0879Single gene

DOOR ID: 2471984		CKR_0879 View Structure
14 1054000-1054103 (+)SAM1054253-1055129 (+)CKR_0937

Nitrogenase iron protein (Nitrogenase Fe protein) (Nitrogenase component II) (Nitrogenase reductase)		CKR_0937Operon

DOOR ID: 511601		CKR_0937,
CKR_0938		 View Structure
15 1058359-1058462 (+)SAM1058635-1059907 (+)CKR_0940

CKR_0940Operon

DOOR ID: 511602		CKR_0940,
CKR_0941,
CKR_0942,
CKR_0943,
CKR_0944,
CKR_0945		 View Structure
16 1156015-1156093 (-)ZMP-ZTP1153682-1155935 (-)CKR_1008

CKR_1008Operon

DOOR ID: 511616		CKR_1007,
CKR_1008		 View Structure
17 1160074-1160160 (+)c-di-GMP-II1160210-1160963 (+)CKR_1011

CKR_1011Single gene

DOOR ID: 2472043		CKR_1011 View Structure
18 1342152-1342262 (-)SAM1341734-1342019 (-)CKR_1203

CKR_1203Single gene

DOOR ID: 2472106		CKR_1203 View Structure
19 1524197-1524313 (+)THF1524453-1525245 (+)CKR_1371

CKR_1371Single gene

DOOR ID: 2472152		CKR_1371 View Structure
20 1619430-1619606 (+)lysine1619725-1621183 (+)CKR_1436

CKR_1436Single gene

DOOR ID: 2472177		CKR_1436 View Structure
21 1712202-1712307 (+)SAM1712451-1713366 (+)CKR_1516

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		CKR_1516Single gene

DOOR ID: 2472219		CKR_1516 View Structure
22 1716083-1716196 (-)SAM1714729-1715941 (-)CKR_1518

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CKR_1518Operon

DOOR ID: 511719		CKR_1517,
CKR_1518		 View Structure
23 1721662-1721770 (-)TPP1721252-1721453 (-)CKR_1524

CKR_1524Operon

DOOR ID: 511720		CKR_1520,
CKR_1521 (thiH),
CKR_1522 (thiG),
CKR_1523,
CKR_1524		 View Structure
24 1877460-1877549 (-)glycine1876248-1877337 (-)CKR_1647

Aminomethyltransferase (0) (Glycine cleavage system T protein)		CKR_1647Operon

DOOR ID: 511746		CKR_1642,
CKR_1643,
CKR_1644,
CKR_1645,
CKR_1646,
CKR_1647		 View Structure
25 1880578-1880685 (-)TPP1879131-1880445 (-)CKR_1649

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CKR_1649Single gene

DOOR ID: 2472265		CKR_1649 View Structure
26 1905474-1905577 (-)SAM1903754-1905392 (-)CKR_1666

CKR_1666Single gene

DOOR ID: 2472275		CKR_1666 View Structure
27 1915190-1915298 (-)SAM1913855-1914911 (-)CKR_1675

CKR_1675Operon

DOOR ID: 511750		CKR_1667,
CKR_1668,
CKR_1669,
CKR_1670,
CKR_1671,
CKR_1672,
CKR_1673,
CKR_1674,
CKR_1675		 View Structure
28 1916561-1916665 (+)SAM1916931-1917147 (+)CKR_1677

CKR_1677Operon

DOOR ID: 511751		CKR_1677,
CKR_1678,
CKR_1679,
CKR_1680,
CKR_1681		 View Structure
29 2009038-2009136 (+)TPP2009202-2009835 (+)CKR_1784

CKR_1784Single gene

DOOR ID: 2472322		CKR_1784 View Structure
30 2138762-2138878 (-)FMN2137375-2138485 (-)CKR_1904

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CKR_1904Operon

DOOR ID: 511795		CKR_1901 (ribH),
CKR_1902,
CKR_1903,
CKR_1904		 View Structure
31 2151738-2151845 (-)SAM2150241-2151609 (-)CKR_1915

CKR_1915Operon

DOOR ID: 511798		CKR_1914,
CKR_1915		 View Structure
32 2309208-2309296 (+)c-di-GMP-I2309415-2310099 (+)CKR_2045

Uncharacterized protein		CKR_2045operon

DOOR ID: 511824		CKR_2045,
CKR_2046		 View Structure
33 2477556-2477659 (-)ykkC-yxkD2477178-2477499 (-)CKR_2177

CKR_2177Operon

DOOR ID: 511852		CKR_2176,
CKR_2177		 View Structure
34 2692028-2692128 (-)purine2691345-2691825 (-)CKR_2385

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CKR_2385Operon

DOOR ID: 511895		CKR_2379,
CKR_2380 (purH),
CKR_2381 (purN),
CKR_2382,
CKR_2383,
CKR_2384,
CKR_2385		 View Structure
35 2695669-2695769 (-)purine2694185-2695592 (-)CKR_2388

CKR_2388Single gene

DOOR ID: 2472555		CKR_2388 View Structure
36 2788613-2788722 (-)SAM2787882-2788116 (-)CKR_2473

CKR_2473Operon

DOOR ID: 511918		CKR_2472,
CKR_2473		 View Structure
37 2887250-2887358 (+)TPP2890744-2891014 (-)CKR_2569

CKR_2569Single gene

DOOR ID: 2472641		CKR_2569 View Structure
38 2906168-2906273 (-)SAM2905274-2906090 (-)CKR_2583

Lipoprotein		CKR_2583Single gene

DOOR ID: 2472650		CKR_2583 View Structure
39 2913608-2913709 (-)TPP2912740-2913541 (-)CKR_2589

CKR_2589Operon

DOOR ID: 511936		CKR_2587 (thiE),
CKR_2588,
CKR_2589		 View Structure
40 3035614-3035728 (-)SAM3035182-3035506 (-)CKR_2699

CKR_2699Single gene

DOOR ID: 2472712		CKR_2699 View Structure
41 3315588-3315684 (-)SAM3315001-3315493 (-)CKR_2942

CKR_2942Single gene

DOOR ID: 2472819		CKR_2942 View Structure
42 3404024-3404120 (-)yybP-ykoY3403228-3403891 (-)CKR_3028

CKR_3028Single gene

DOOR ID: 2472868		CKR_3028 View Structure
43 3409555-3409742 (-)cobalamin3408657-3409398 (-)CKR_3034

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CKR_3034Operon

DOOR ID: 512011		CKR_3031,
CKR_3032,
CKR_3033,
CKR_3034		 View Structure
44 3493811-3493900 (-)c-di-GMP-I3493326-3493659 (-)CKR_3101

Uncharacterized protein		CKR_3101single gene

DOOR ID: 2472909		CKR_3101 View Structure
45 3505812-3505898 (-)glycine3504157-3505519 (-)CKR_3112

CKR_3112Single gene

DOOR ID: 2472917		CKR_3112 View Structure
46 3572832-3573001 (-)ykoK3571353-3572616 (-)CKR_3167

CKR_3167Single gene

DOOR ID: 2472934		CKR_3167 View Structure
47 3594831-3594949 (-)FMN3593964-3594591 (-)CKR_3189

Riboflavin transporter		CKR_3189Single gene

DOOR ID: 2472947		CKR_3189 View Structure
48 3650741-3650846 (-)SAM3649496-3650672 (-)CKR_3244

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CKR_3244Single gene

DOOR ID: 2472973		CKR_3244 View Structure
49 3828588-3828674 (-)c-di-GMP-I3827691-3828105 (-)CKR_3394

Uncharacterized protein		CKR_3394single gene

DOOR ID: 2473041		CKR_3394 View Structure
50 3835285-3835365 (+)ZMP-ZTP3835694-3836597 (+)CKR_3403

CKR_3403Operon

DOOR ID: 512081		CKR_3403,
CKR_3404		 View Structure
51 3835432-3835547 (+)THF3835694-3836597 (+)CKR_3403

CKR_3403Operon

DOOR ID: 512081		CKR_3403,
CKR_3404		 View Structure