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Genome:
Chloroflexus aggregans DSM 9485
(
NC_011831.1
);
Phylum:
Chloroflexi
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1199845-1199956
(-)
SAM
1198446-1199742 (-)
Cagg_0970
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Cagg_0970
Operon
DOOR ID:
509798
Cagg_0969,
Cagg_0970
View Structure
2
1573923-1574068
(-)
cobalamin
1573198-1573807 (-)
Cagg_1279
Cob(I)alamin adenosyltransferase (7)
Cagg_1279
Operon
DOOR ID:
509866
Cagg_1278,
Cagg_1279
View Structure
3
1659433-1659494
(+)
fluoride
1659517-1659718 (-)
Cagg_1339
Cagg_1339
Single gene
DOOR ID:
2468393
Cagg_1339
View Structure
4
2381230-2381337
(-)
SAM
2379960-2381157 (-)
Cagg_1948
Cystathionine gamma-synthase (8)
Cagg_1948
Operon
DOOR ID:
509997
Cagg_1947,
Cagg_1948
View Structure
5
2673585-2673726
(-)
cobalamin
2672352-2673414 (-)
Cagg_2179
LPXTG-motif cell wall anchor domain protein
Cagg_2179
Operon
DOOR ID:
510044
Cagg_2178,
Cagg_2179
View Structure
6
3236125-3236287
(+)
FMN
3236460-3237690 (+)
Cagg_2639
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Cagg_2639
Operon
DOOR ID:
510140
Cagg_2639,
Cagg_2640,
Cagg_2641,
Cagg_2642
View Structure
7
3359509-3359633
(-)
FMN
3358550-3359354 (-)
Cagg_2734
Binding-protein-dependent transport systems inner membrane component
Cagg_2734
Single gene
DOOR ID:
2468971
Cagg_2734
View Structure
8
3775453-3775568
(+)
TPP
3775637-3775931 (+)
Cagg_3115
Cagg_3115
Operon
DOOR ID:
510239
Cagg_3115,
Cagg_3116,
Cagg_3117
View Structure
9
3843289-3843412
(+)
TPP
3843516-3844353 (+)
Cagg_3165
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Cagg_3165
Operon
DOOR ID:
510251
Cagg_3164,
Cagg_3165,
Cagg_3166,
Cagg_3167
View Structure
10
3930121-3930322
(-)
glmS
3928104-3929967 (-)
Cagg_3243
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Cagg_3243
Single gene
DOOR ID:
2469136
Cagg_3243
View Structure
11
4323854-4323960
(+)
SAM
4323989-4325063 (+)
Cagg_3560
Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)
Cagg_3560
Operon
DOOR ID:
510335
Cagg_3560,
Cagg_3561
View Structure
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1199845-1199956";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1198446-1199742";i:10;s:1:"-";i:11;s:9:"Cagg_0970";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Cagg_0970";i:14;s:6:"Operon";i:15;s:6:"509798";i:16;s:19:"Cagg_0969;Cagg_0970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1573923-1574068";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1573198-1573807";i:10;s:1:"-";i:11;s:9:"Cagg_1279";i:12;s:36:"Cob(I)alamin adenosyltransferase (7)";i:13;s:9:"Cagg_1279";i:14;s:6:"Operon";i:15;s:6:"509866";i:16;s:19:"Cagg_1278;Cagg_1279";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1659433-1659494";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1659517-1659718";i:10;s:1:"-";i:11;s:9:"Cagg_1339";i:12;s:0:"";i:13;s:9:"Cagg_1339";i:14;s:11:"Single gene";i:15;s:7:"2468393";i:16;s:9:"Cagg_1339";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2381230-2381337";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2379960-2381157";i:10;s:1:"-";i:11;s:9:"Cagg_1948";i:12;s:32:"Cystathionine gamma-synthase (8)";i:13;s:9:"Cagg_1948";i:14;s:6:"Operon";i:15;s:6:"509997";i:16;s:19:"Cagg_1947;Cagg_1948";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2673585-2673726";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2672352-2673414";i:10;s:1:"-";i:11;s:9:"Cagg_2179";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:9:"Cagg_2179";i:14;s:6:"Operon";i:15;s:6:"510044";i:16;s:19:"Cagg_2178;Cagg_2179";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3236125-3236287";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3236460-3237690";i:10;s:1:"+";i:11;s:9:"Cagg_2639";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Cagg_2639";i:14;s:6:"Operon";i:15;s:6:"510140";i:16;s:39:"Cagg_2639;Cagg_2640;Cagg_2641;Cagg_2642";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3359509-3359633";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3358550-3359354";i:10;s:1:"-";i:11;s:9:"Cagg_2734";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Cagg_2734";i:14;s:11:"Single gene";i:15;s:7:"2468971";i:16;s:9:"Cagg_2734";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3775453-3775568";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3775637-3775931";i:10;s:1:"+";i:11;s:9:"Cagg_3115";i:12;s:0:"";i:13;s:9:"Cagg_3115";i:14;s:6:"Operon";i:15;s:6:"510239";i:16;s:29:"Cagg_3115;Cagg_3116;Cagg_3117";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3843289-3843412";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3843516-3844353";i:10;s:1:"+";i:11;s:9:"Cagg_3165";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Cagg_3165";i:14;s:6:"Operon";i:15;s:6:"510251";i:16;s:39:"Cagg_3164;Cagg_3165;Cagg_3166;Cagg_3167";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3930121-3930322";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"3928104-3929967";i:10;s:1:"-";i:11;s:9:"Cagg_3243";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Cagg_3243";i:14;s:11:"Single gene";i:15;s:7:"2469136";i:16;s:9:"Cagg_3243";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011831.1";i:2;s:32:"Chloroflexus aggregans DSM 9485 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4323854-4323960";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4323989-4325063";i:10;s:1:"+";i:11;s:9:"Cagg_3560";i:12;s:115:"Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)";i:13;s:9:"Cagg_3560";i:14;s:6:"Operon";i:15;s:6:"510335";i:16;s:19:"Cagg_3560;Cagg_3561";i:17;s:119:"L-methionine salvage from methylthioadenosine [GO:0019509]; L-methionine salvage from S-adenosylmethionine [GO:0019284]";i:18;s:15:"View Structure ";}}