Genome: Desulfitobacterium hafniense DCB-2 (NC_011830.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 23006-23187 (+)cobalamin23309-24863 (+)Dhaf_0025

FMN-binding domain protein		Dhaf_0025Single gene

DOOR ID: 2466075		Dhaf_0025 View Structure
2 32394-32584 (+)cobalamin32885-34526 (+)Dhaf_0035

Extracellular solute-binding protein family 5		Dhaf_0035Single gene

DOOR ID: 2466078		Dhaf_0035 View Structure
3 388759-388943 (-)cobalamin386241-388611 (-)Dhaf_0351

Anaerobic ribonucleoside-triphosphate reductase 		Dhaf_0351Operon

DOOR ID: 508642		Dhaf_0350,
Dhaf_0351		 View Structure
4 831944-832091 (+)ydaO-yuaA832207-833095 (+)Dhaf_0746

Ectoine/hydroxyectoine ABC transporter solute-binding protein		Dhaf_0746Operon

DOOR ID: 508725		Dhaf_0746,
Dhaf_0747,
Dhaf_0748,
Dhaf_0749		 View Structure
5 930553-930726 (+)glmS930880-932704 (+)Dhaf_0836

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Dhaf_0836Single gene

DOOR ID: 2466383		Dhaf_0836 View Structure
6 966679-966785 (+)TPP966895-967192 (+)Dhaf_0876

Dhaf_0876Operon

DOOR ID: 508754		Dhaf_0876,
Dhaf_0877,
Dhaf_0878,
Dhaf_0879		 View Structure
7 1127794-1127881 (-)c-di-GMP-I1126628-1127690 (-)Dhaf_1030

Metal dependent phosphohydrolase		Dhaf_1030single gene

DOOR ID: 2466468		Dhaf_1030 View Structure
8 1167165-1167263 (+)ykkC-yxkD1167328-1167670 (+)Dhaf_1073

Small multidrug resistance protein		Dhaf_1073Operon

DOOR ID: 508792		Dhaf_1073,
Dhaf_1074		 View Structure
9 1219401-1219491 (+)glycine1219633-1219936 (+)Dhaf_1126

Dhaf_1126Operon

DOOR ID: 508807		Dhaf_1126,
Dhaf_1127		 View Structure
10 1395434-1395612 (+)cobalamin1397059-1397803 (+)Dhaf_1297

Precorrin-2 C20-methyltransferase		Dhaf_1297Operon

DOOR ID: 508850		Dhaf_1296,
Dhaf_1297		 View Structure
11 1445324-1445451 (-)ydaO-yuaA1443977-1445219 (-)Dhaf_1337

Lysine 2;3-aminomutase YodO family protein 		Dhaf_1337Operon

DOOR ID: 508857		Dhaf_1336,
Dhaf_1337		 View Structure
12 1489621-1489719 (-)SAM1488374-1489505 (-)Dhaf_1383

Cystathionine gamma-synthase (8)		Dhaf_1383Single gene

DOOR ID: 2466597		Dhaf_1383 View Structure
13 1491288-1491389 (+)SAM1491495-1492524 (+)Dhaf_1386

Homoserine dehydrogenase 		Dhaf_1386Single gene

DOOR ID: 2466598		Dhaf_1386 View Structure
14 1508265-1508391 (+)MOCO1508463-1509435 (+)Dhaf_1400

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		Dhaf_1400Operon

DOOR ID: 508870		Dhaf_1400,
Dhaf_1401,
Dhaf_1402,
Dhaf_1403		 View Structure
15 1563423-1563524 (+)purine1563828-1567683 (+)Dhaf_1471

Phosphoribosylformylglycinamidine synthase 		Dhaf_1471Operon

DOOR ID: 508881		Dhaf_1471,
Dhaf_1472		 View Structure
16 1583658-1583758 (-)SAM1582554-1583577 (-)Dhaf_1487

Methionine import ATP-binding protein MetN 		Dhaf_1487Operon

DOOR ID: 508884		Dhaf_1486,
Dhaf_1487		 View Structure
17 1628321-1628469 (+)cobalamin1628759-1630118 (+)Dhaf_1527

Transposase IS1182 family protein		Dhaf_1527Single gene

DOOR ID: 2466648		Dhaf_1527 View Structure
18 1638895-1639074 (+)cobalamin1639226-1639883 (+)Dhaf_1536

Dhaf_1536Single gene

DOOR ID: 2466652		Dhaf_1536 View Structure
19 1640038-1640170 (+)MOCO1640275-1641586 (+)Dhaf_1537

Molybdopterin binding domain protein		Dhaf_1537Operon

DOOR ID: 508894		Dhaf_1537,
Dhaf_1538,
Dhaf_1539,
Dhaf_1540,
Dhaf_1541,
Dhaf_1542,
Dhaf_1543,
Dhaf_1544		 View Structure
20 1728451-1728583 (-)MOCO1726825-1728364 (-)Dhaf_1618

Dhaf_1618Single gene

DOOR ID: 2466683		Dhaf_1618 View Structure
21 1776072-1776221 (-)FMN1774969-1775932 (-)Dhaf_1660

Dhaf_1660Single gene

DOOR ID: 2466695		Dhaf_1660 View Structure
22 1809994-1810123 (+)MOCO1810238-1811522 (+)Dhaf_1698

Dhaf_1698Operon

DOOR ID: 508933		Dhaf_1697,
Dhaf_1698		 View Structure
23 1831074-1831170 (+)purine1831308-1833009 (+)Dhaf_1712

Adenine deaminase (Adenase) (Adenine aminase) 		Dhaf_1712Single gene

DOOR ID: 2466709		Dhaf_1712 View Structure
24 2401011-2401143 (+)MOCO2401274-2401997 (+)Dhaf_2221

Transcriptional regulator; Crp/Fnr family		Dhaf_2221Operon

DOOR ID: 509044		Dhaf_2221,
Dhaf_2222,
Dhaf_2223,
Dhaf_2224,
Dhaf_2225		 View Structure
25 2479778-2479959 (+)lysine2480081-2480930 (+)Dhaf_2296

Extracellular solute-binding protein family 3		Dhaf_2296Single gene

DOOR ID: 2466922		Dhaf_2296 View Structure
26 2615723-2615811 (+)c-di-GMP-I2615948-2617220 (-)Dhaf_2424

Signal transduction histidine kinase regulating citrate/malate metabolism		Dhaf_2424operon

DOOR ID: 509091		Dhaf_2424,
Dhaf_2425,
Dhaf_2426		 View Structure
27 2632813-2632901 (+)c-di-GMP-I2633315-2633735 (+)Dhaf_2435

RNA polymerase; sigma-24 subunit; ECF subfamily		Dhaf_2435single gene

DOOR ID: 2466971		Dhaf_2435 View Structure
28 2677591-2677690 (+)ykkC-yxkD2677902-2678784 (+)Dhaf_2480

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Dhaf_2480Single gene

DOOR ID: 2466991		Dhaf_2480 View Structure
29 2722121-2722233 (+)TPP2722322-2723621 (+)Dhaf_2518

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Dhaf_2518Operon

DOOR ID: 509110		Dhaf_2518,
Dhaf_2519,
Dhaf_2520,
Dhaf_2521,
Dhaf_2522		 View Structure
30 2753715-2753898 (+)cobalamin2754340-2755912 (+)Dhaf_2550

Extracellular solute-binding protein family 5		Dhaf_2550Operon

DOOR ID: 509117		Dhaf_2550,
Dhaf_2551,
Dhaf_2552,
Dhaf_2553,
Dhaf_2554,
Dhaf_2555		 View Structure
31 2753982-2754163 (+)cobalamin2754340-2755912 (+)Dhaf_2550

Extracellular solute-binding protein family 5		Dhaf_2550Operon

DOOR ID: 509117		Dhaf_2550,
Dhaf_2551,
Dhaf_2552,
Dhaf_2553,
Dhaf_2554,
Dhaf_2555		 View Structure
32 2793844-2793979 (-)ydaO-yuaA2792410-2793841 (-)Dhaf_2593

NLP/P60 protein		Dhaf_2593Single gene

DOOR ID: 2467040		Dhaf_2593 View Structure
33 2802607-2802794 (+)cobalamin2802974-2803715 (+)Dhaf_2601

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Dhaf_2601Operon

DOOR ID: 509124		Dhaf_2601,
Dhaf_2602		 View Structure
34 2963278-2963430 (-)MOCO2960615-2962022 (+)Dhaf_2760

VWA containing CoxE family protein		Dhaf_2760Operon

DOOR ID: 509151		Dhaf_2759,
Dhaf_2760		 View Structure
35 3015833-3015947 (+)FMN3016077-3017175 (+)Dhaf_2808

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Dhaf_2808Operon

DOOR ID: 509160		Dhaf_2808,
Dhaf_2809,
Dhaf_2810,
Dhaf_2811 (ribH)		 View Structure
36 3262073-3262209 (-)ydaO-yuaA3261244-3262069 (-)Dhaf_3043

NLP/P60 protein		Dhaf_3043Single gene

DOOR ID: 2467246		Dhaf_3043 View Structure
37 3481938-3482081 (+)cobalamin3482196-3483165 (+)Dhaf_3249

Periplasmic binding protein		Dhaf_3249Single gene

DOOR ID: 2467330		Dhaf_3249 View Structure
38 3497384-3497444 (+)fluoride3497490-3497865 (+)Dhaf_3267

Putative fluoride ion transporter CrcB		Dhaf_3267Operon

DOOR ID: 509250		Dhaf_3267,
Dhaf_3268		 View Structure
39 3515165-3515338 (+)cobalamin3515467-3516574 (+)Dhaf_3285

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Dhaf_3285Operon

DOOR ID: 509257		Dhaf_3285,
Dhaf_3286,
Dhaf_3287		 View Structure
40 3634381-3634475 (-)c-di-GMP-I3633023-3634193 (-)Dhaf_3397

Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA)		Dhaf_3397single gene

DOOR ID: 2467387		Dhaf_3397 View Structure
41 4125233-4125415 (-)cobalamin4124352-4125126 (-)Dhaf_3890

Dhaf_3890Operon

DOOR ID: 509372		Dhaf_3887,
Dhaf_3888,
Dhaf_3889,
Dhaf_3890		 View Structure
42 4288553-4288660 (-)glycine4287257-4288355 (-)Dhaf_4039

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Dhaf_4039Single gene

DOOR ID: 2467605		Dhaf_4039 View Structure
43 4878317-4878423 (-)SAM4877282-4878206 (-)Dhaf_4581

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Dhaf_4581Operon

DOOR ID: 509516		Dhaf_4580,
Dhaf_4581		 View Structure
44 4958095-4958179 (+)c-di-GMP-I4958334-4960296 (+)Dhaf_4649

Methyl-accepting chemotaxis sensory transducer		Dhaf_4649single gene

DOOR ID: 2467804		Dhaf_4649 View Structure
45 5201192-5201366 (-)lysine5199700-5200951 (-)Dhaf_4876

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Dhaf_4876Single gene

DOOR ID: 2467892		Dhaf_4876 View Structure
46 5207019-5207098 (+)glycine5207364-5208747 (+)Dhaf_4884

Amino acid carrier protein		Dhaf_4884Single gene

DOOR ID: 2467900		Dhaf_4884 View Structure
47 5207100-5207193 (+)glycine5207364-5208747 (+)Dhaf_4884

Amino acid carrier protein		Dhaf_4884Single gene

DOOR ID: 2467900		Dhaf_4884 View Structure