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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
477879-477984
(-)
SAH
476446-477856 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PLES_04301
Operon
DOOR ID:
505277
PLES_04281
(metF)
,
PLES_04291,
PLES_04301
(sahH)
View Structure
2
1000939-1001101
(+)
FMN
1001284-1001944 (+)
ribC
PLES_09211
Operon
DOOR ID:
505387
PLES_09211
(ribC)
,
PLES_09221
(ribB)
,
PLES_09231
(ribH)
,
PLES_09241
(nusB)
,
PLES_09251
(thiL)
,
PLES_09261
(pgpA)
,
PLES_09271,
PLES_09281
View Structure
3
1949710-1949766
(-)
mini-ykkC
1949370-1949685 (-)
PLES_18021
PLES_18021
Single gene
DOOR ID:
2458733
PLES_18021
View Structure
4
2289143-2289293
(-)
cobalamin
2287638-2288067 (-)
PLES_21161
PLES_21161
Operon
DOOR ID:
505621
PLES_21151
(cobM)
,
PLES_21161
View Structure
5
2289352-2289543
(+)
cobalamin
2289588-2290716 (+)
PLES_21181
PLES_21181
Operon
DOOR ID:
505622
PLES_21181,
PLES_21191
(cobN)
View Structure
6
2329401-2329606
(-)
cobalamin
2327145-2329302 (-)
PLES_21531
PLES_21531
Operon
DOOR ID:
505628
PLES_21501,
PLES_21511,
PLES_21521,
PLES_21531
View Structure
7
2329764-2329929
(+)
yybP-ykoY
2329938-2330508 (+)
PLES_21541
Putative manganese efflux pump MntP
PLES_21541
Single gene
DOOR ID:
2458856
PLES_21541
View Structure
8
2333714-2333965
(+)
cobalamin
2335421-2336048 (+)
cobH
PLES_21591
Operon
DOOR ID:
505630
PLES_21581,
PLES_21591
(cobH)
,
PLES_21601
(cobI)
,
PLES_21611
(cobJ)
View Structure
9
3814489-3814537
(-)
mini-ykkC
3814150-3814474 (-)
PLES_34411
PLES_34411
Operon
DOOR ID:
505885
PLES_34401,
PLES_34411
View Structure
10
4459248-4459456
(-)
cobalamin
4457301-4459152 (-)
PLES_40411
PLES_40411
Operon
DOOR ID:
506006
PLES_40311
(cobS)
,
PLES_40321,
PLES_40331
(cobT)
,
PLES_40341
(cobU)
,
PLES_40351
(cobQ)
,
PLES_40361
(cobC)
,
PLES_40371
(cobD)
,
PLES_40381,
PLES_40391
(cobB)
,
PLES_40401
(cobO)
,
PLES_40411
View Structure
11
5248282-5248344
(-)
fluoride
5247833-5248217 (-)
PLES_47621
Putative fluoride ion transporter CrcB
PLES_47621
Single gene
DOOR ID:
2459917
PLES_47621
View Structure
12
5532111-5532234
(+)
yybP-ykoY
5532324-5532903 (+)
PLES_50141
PLES_50141
Single gene
DOOR ID:
2460002
PLES_50141
View Structure
13
5916070-5916206
(-)
TPP
5914096-5915980 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PLES_53591
Single gene
DOOR ID:
2460123
PLES_53591
(thiC)
View Structure
Genome:
Pseudomonas aeruginosa LESB58
(
NC_011770.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"477879-477984";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"476446-477856";i:10;s:1:"-";i:11;s:4:"sahH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"PLES_04301";i:14;s:6:"Operon";i:15;s:6:"505277";i:16;s:44:"PLES_04281(metF);PLES_04291;PLES_04301(sahH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1000939-1001101";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1001284-1001944";i:10;s:1:"+";i:11;s:4:"ribC";i:12;s:0:"";i:13;s:10:"PLES_09211";i:14;s:6:"Operon";i:15;s:6:"505387";i:16;s:123:"PLES_09211(ribC);PLES_09221(ribB);PLES_09231(ribH);PLES_09241(nusB);PLES_09251(thiL);PLES_09261(pgpA);PLES_09271;PLES_09281";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1949710-1949766";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1949370-1949685";i:10;s:1:"-";i:11;s:10:"PLES_18021";i:12;s:0:"";i:13;s:10:"PLES_18021";i:14;s:11:"Single gene";i:15;s:7:"2458733";i:16;s:10:"PLES_18021";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2289143-2289293";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2287638-2288067";i:10;s:1:"-";i:11;s:10:"PLES_21161";i:12;s:0:"";i:13;s:10:"PLES_21161";i:14;s:6:"Operon";i:15;s:6:"505621";i:16;s:27:"PLES_21151(cobM);PLES_21161";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2289352-2289543";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2289588-2290716";i:10;s:1:"+";i:11;s:10:"PLES_21181";i:12;s:0:"";i:13;s:10:"PLES_21181";i:14;s:6:"Operon";i:15;s:6:"505622";i:16;s:27:"PLES_21181;PLES_21191(cobN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2329401-2329606";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2327145-2329302";i:10;s:1:"-";i:11;s:10:"PLES_21531";i:12;s:0:"";i:13;s:10:"PLES_21531";i:14;s:6:"Operon";i:15;s:6:"505628";i:16;s:43:"PLES_21501;PLES_21511;PLES_21521;PLES_21531";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2329764-2329929";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2329938-2330508";i:10;s:1:"+";i:11;s:10:"PLES_21541";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"PLES_21541";i:14;s:11:"Single gene";i:15;s:7:"2458856";i:16;s:10:"PLES_21541";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2333714-2333965";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2335421-2336048";i:10;s:1:"+";i:11;s:4:"cobH";i:12;s:0:"";i:13;s:10:"PLES_21591";i:14;s:6:"Operon";i:15;s:6:"505630";i:16;s:61:"PLES_21581;PLES_21591(cobH);PLES_21601(cobI);PLES_21611(cobJ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3814489-3814537";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3814150-3814474";i:10;s:1:"-";i:11;s:10:"PLES_34411";i:12;s:0:"";i:13;s:10:"PLES_34411";i:14;s:6:"Operon";i:15;s:6:"505885";i:16;s:21:"PLES_34401;PLES_34411";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4459248-4459456";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4457301-4459152";i:10;s:1:"-";i:11;s:10:"PLES_40411";i:12;s:0:"";i:13;s:10:"PLES_40411";i:14;s:6:"Operon";i:15;s:6:"506006";i:16;s:168:"PLES_40311(cobS);PLES_40321;PLES_40331(cobT);PLES_40341(cobU);PLES_40351(cobQ);PLES_40361(cobC);PLES_40371(cobD);PLES_40381;PLES_40391(cobB);PLES_40401(cobO);PLES_40411";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5248282-5248344";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5247833-5248217";i:10;s:1:"-";i:11;s:10:"PLES_47621";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"PLES_47621";i:14;s:11:"Single gene";i:15;s:7:"2459917";i:16;s:10:"PLES_47621";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5532111-5532234";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5532324-5532903";i:10;s:1:"+";i:11;s:10:"PLES_50141";i:12;s:0:"";i:13;s:10:"PLES_50141";i:14;s:11:"Single gene";i:15;s:7:"2460002";i:16;s:10:"PLES_50141";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011770.1";i:2;s:30:"Pseudomonas aeruginosa LESB58 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5916070-5916206";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5914096-5915980";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"PLES_53591";i:14;s:11:"Single gene";i:15;s:7:"2460123";i:16;s:16:"PLES_53591(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}