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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
965742-965847
(-)
TPP
965466-965667 (-)
DvMF_0801
Thiamine biosynthesis protein ThiS
DvMF_0801
Operon
DOOR ID:
504753
DvMF_0799
(thiH)
,
DvMF_0800
(thiG)
,
DvMF_0801
View Structure
2
965944-966047
(-)
TPP
965466-965667 (-)
DvMF_0801
Thiamine biosynthesis protein ThiS
DvMF_0801
Operon
DOOR ID:
504753
DvMF_0799
(thiH)
,
DvMF_0800
(thiG)
,
DvMF_0801
View Structure
3
1194635-1194783
(+)
ydaO-yuaA
1195100-1197143 (+)
DvMF_0985
Probable potassium transport system protein kup
DvMF_0985
Single gene
DOOR ID:
2456917
DvMF_0985
View Structure
4
1360081-1360242
(-)
yybP-ykoY
1358819-1360046 (-)
DvMF_1109
Sodium/calcium exchanger membrane region
DvMF_1109
Single gene
DOOR ID:
2456973
DvMF_1109
View Structure
5
1760628-1760811
(-)
yybP-ykoY
1760026-1760614 (-)
DvMF_1438
DvMF_1438
Single gene
DOOR ID:
2457141
DvMF_1438
View Structure
6
1806582-1806821
(-)
cobalamin
1804297-1806412 (-)
DvMF_1473
Anaerobic ribonucleoside-triphosphate reductase
DvMF_1473
Single gene
DOOR ID:
2457156
DvMF_1473
View Structure
7
1846273-1846454
(+)
cobalamin
1846655-1847657 (+)
DvMF_1496
Anaerobic cobalt chelatase
DvMF_1496
Operon
DOOR ID:
504885
DvMF_1496,
DvMF_1497,
DvMF_1498,
DvMF_1499
View Structure
8
2813461-2813545
(+)
ZMP-ZTP
2813880-2815104 (+)
DvMF_2241
Benzoate transporter
DvMF_2241
Single gene
DOOR ID:
2457559
DvMF_2241
View Structure
9
3387006-3387165
(+)
FMN
3387456-3388110 (+)
DvMF_2680
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
DvMF_2680
Single gene
DOOR ID:
2457758
DvMF_2680
View Structure
10
3489878-3489990
(+)
glycine
3490624-3491650 (-)
DvMF_2760
DvMF_2760
Single gene
DOOR ID:
2457796
DvMF_2760
View Structure
11
3872318-3872438
(-)
SAM
3871762-3872029 (-)
DvMF_3066
DvMF_3066
Single gene
DOOR ID:
2457967
DvMF_3066
View Structure
Genome:
Desulfovibrio vulgaris str. 'Miyazaki F'
(
NC_011769.1
);
Phylum:
delta/epsilon subdivisions
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"965742-965847";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"965466-965667";i:10;s:1:"-";i:11;s:9:"DvMF_0801";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"DvMF_0801";i:14;s:6:"Operon";i:15;s:6:"504753";i:16;s:41:"DvMF_0799(thiH);DvMF_0800(thiG);DvMF_0801";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"965944-966047";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"965466-965667";i:10;s:1:"-";i:11;s:9:"DvMF_0801";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"DvMF_0801";i:14;s:6:"Operon";i:15;s:6:"504753";i:16;s:41:"DvMF_0799(thiH);DvMF_0800(thiG);DvMF_0801";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1194635-1194783";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1195100-1197143";i:10;s:1:"+";i:11;s:9:"DvMF_0985";i:12;s:47:"Probable potassium transport system protein kup";i:13;s:9:"DvMF_0985";i:14;s:11:"Single gene";i:15;s:7:"2456917";i:16;s:9:"DvMF_0985";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1360081-1360242";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1358819-1360046";i:10;s:1:"-";i:11;s:9:"DvMF_1109";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:9:"DvMF_1109";i:14;s:11:"Single gene";i:15;s:7:"2456973";i:16;s:9:"DvMF_1109";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1760628-1760811";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1760026-1760614";i:10;s:1:"-";i:11;s:9:"DvMF_1438";i:12;s:0:"";i:13;s:9:"DvMF_1438";i:14;s:11:"Single gene";i:15;s:7:"2457141";i:16;s:9:"DvMF_1438";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1806582-1806821";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1804297-1806412";i:10;s:1:"-";i:11;s:9:"DvMF_1473";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:9:"DvMF_1473";i:14;s:11:"Single gene";i:15;s:7:"2457156";i:16;s:9:"DvMF_1473";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1846273-1846454";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1846655-1847657";i:10;s:1:"+";i:11;s:9:"DvMF_1496";i:12;s:26:"Anaerobic cobalt chelatase";i:13;s:9:"DvMF_1496";i:14;s:6:"Operon";i:15;s:6:"504885";i:16;s:39:"DvMF_1496;DvMF_1497;DvMF_1498;DvMF_1499";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2813461-2813545";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2813880-2815104";i:10;s:1:"+";i:11;s:9:"DvMF_2241";i:12;s:20:"Benzoate transporter";i:13;s:9:"DvMF_2241";i:14;s:11:"Single gene";i:15;s:7:"2457559";i:16;s:9:"DvMF_2241";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3387006-3387165";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3387456-3388110";i:10;s:1:"+";i:11;s:9:"DvMF_2680";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"DvMF_2680";i:14;s:11:"Single gene";i:15;s:7:"2457758";i:16;s:9:"DvMF_2680";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3489878-3489990";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3490624-3491650";i:10;s:1:"-";i:11;s:9:"DvMF_2760";i:12;s:0:"";i:13;s:9:"DvMF_2760";i:14;s:11:"Single gene";i:15;s:7:"2457796";i:16;s:9:"DvMF_2760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011769.1";i:2;s:41:"Desulfovibrio vulgaris str. 'Miyazaki F' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3872318-3872438";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3871762-3872029";i:10;s:1:"-";i:11;s:9:"DvMF_3066";i:12;s:0:"";i:13;s:9:"DvMF_3066";i:14;s:11:"Single gene";i:15;s:7:"2457967";i:16;s:9:"DvMF_3066";i:17;s:0:"";i:18;s:15:"View Structure ";}}
