About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
598001-598197
(+)
cobalamin
598305-599622 (+)
Dalk_0439
Thiamine biosynthesis protein ThiC
Dalk_0439
Single gene
DOOR ID:
2454525
Dalk_0439
View Structure
2
599712-599900
(+)
cobalamin
600157-601030 (+)
Dalk_0440
Sirohydrochlorin cobaltochelatase
Dalk_0440
Operon
DOOR ID:
503629
Dalk_0440,
Dalk_0441,
Dalk_0442
View Structure
3
1019644-1019832
(+)
cobalamin
1019957-1020851 (+)
Dalk_0759
Periplasmic binding protein
Dalk_0759
Operon
DOOR ID:
503689
Dalk_0759,
Dalk_0760,
Dalk_0761
View Structure
4
1470927-1471024
(+)
TPP
1471090-1472380 (+)
Dalk_1103
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dalk_1103
Single gene
DOOR ID:
2454793
Dalk_1103
View Structure
5
2114215-2114462
(-)
cobalamin
2113159-2114101 (-)
Dalk_1608
Dalk_1608
Single gene
DOOR ID:
2455036
Dalk_1608
View Structure
6
3129812-3129912
(-)
TPP
3128984-3129755 (-)
Dalk_2394
Thiamine thiazole synthase
Dalk_2394
Operon
DOOR ID:
504006
Dalk_2393,
Dalk_2394
View Structure
7
3523916-3523993
(+)
c-di-GMP-I
3524524-3525586 (+)
Dalk_2723
Protein with response regulator receiver domain
Dalk_2723
single gene
DOOR ID:
2455519
Dalk_2723
View Structure
8
3769265-3769448
(+)
cobalamin
3769574-3771683 (+)
Dalk_2937
TonB-dependent receptor plug
Dalk_2937
Single gene
DOOR ID:
2455601
Dalk_2937
View Structure
9
3859684-3859865
(+)
cobalamin
3860324-3861095 (+)
Dalk_3016
Sirohydrochlorin cobaltochelatase
Dalk_3016
Single gene
DOOR ID:
2455634
Dalk_3016
View Structure
10
4141109-4141188
(+)
c-di-GMP-I
4141298-4141649 (+)
Dalk_3259
Uncharacterized protein
Dalk_3259
single gene
DOOR ID:
2455722
Dalk_3259
View Structure
11
4141190-4141274
(+)
c-di-GMP-I
4141298-4141649 (+)
Dalk_3259
Uncharacterized protein
Dalk_3259
single gene
DOOR ID:
2455722
Dalk_3259
View Structure
12
4327336-4327486
(-)
FMN
4326491-4327139 (-)
Dalk_3412
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dalk_3412
Single gene
DOOR ID:
2455781
Dalk_3412
View Structure
13
4557734-4557854
(+)
cobalamin
4557992-4558187 (+)
Dalk_3605
Dalk_3605
Single gene
DOOR ID:
2455836
Dalk_3605
View Structure
14
5092093-5092277
(+)
cobalamin
5092433-5093156 (+)
Dalk_4054
Cytochrome c assembly protein
Dalk_4054
Operon
DOOR ID:
504366
Dalk_4054,
Dalk_4055
View Structure
15
5105387-5105573
(+)
cobalamin
5105726-5107757 (+)
Dalk_4063
TonB-dependent receptor plug
Dalk_4063
Single gene
DOOR ID:
2455989
Dalk_4063
View Structure
16
5865587-5865666
(-)
c-di-GMP-I
5864630-5865521 (-)
Dalk_4748
Alpha/beta fold family hydrolase
Dalk_4748
single gene
DOOR ID:
2456232
Dalk_4748
View Structure
Genome:
Desulfatibacillum alkenivorans AK-01
(
NC_011768.1
);
Phylum:
delta/epsilon subdivisions
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"598001-598197";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"598305-599622";i:10;s:1:"+";i:11;s:9:"Dalk_0439";i:12;s:34:"Thiamine biosynthesis protein ThiC";i:13;s:9:"Dalk_0439";i:14;s:11:"Single gene";i:15;s:7:"2454525";i:16;s:9:"Dalk_0439";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"599712-599900";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"600157-601030";i:10;s:1:"+";i:11;s:9:"Dalk_0440";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:9:"Dalk_0440";i:14;s:6:"Operon";i:15;s:6:"503629";i:16;s:29:"Dalk_0440;Dalk_0441;Dalk_0442";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1019644-1019832";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1019957-1020851";i:10;s:1:"+";i:11;s:9:"Dalk_0759";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Dalk_0759";i:14;s:6:"Operon";i:15;s:6:"503689";i:16;s:29:"Dalk_0759;Dalk_0760;Dalk_0761";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1470927-1471024";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1471090-1472380";i:10;s:1:"+";i:11;s:9:"Dalk_1103";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Dalk_1103";i:14;s:11:"Single gene";i:15;s:7:"2454793";i:16;s:9:"Dalk_1103";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2114215-2114462";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2113159-2114101";i:10;s:1:"-";i:11;s:9:"Dalk_1608";i:12;s:0:"";i:13;s:9:"Dalk_1608";i:14;s:11:"Single gene";i:15;s:7:"2455036";i:16;s:9:"Dalk_1608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3129812-3129912";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3128984-3129755";i:10;s:1:"-";i:11;s:9:"Dalk_2394";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:9:"Dalk_2394";i:14;s:6:"Operon";i:15;s:6:"504006";i:16;s:19:"Dalk_2393;Dalk_2394";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3523916-3523993";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3524524-3525586";i:10;s:1:"+";i:11;s:9:"Dalk_2723";i:12;s:47:"Protein with response regulator receiver domain";i:13;s:9:"Dalk_2723";i:14;s:11:"single gene";i:15;s:7:"2455519";i:16;s:9:"Dalk_2723";i:17;s:52:"phosphorelay signal transduction system [GO:0000160]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3769265-3769448";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3769574-3771683";i:10;s:1:"+";i:11;s:9:"Dalk_2937";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Dalk_2937";i:14;s:11:"Single gene";i:15;s:7:"2455601";i:16;s:9:"Dalk_2937";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3859684-3859865";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3860324-3861095";i:10;s:1:"+";i:11;s:9:"Dalk_3016";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:9:"Dalk_3016";i:14;s:11:"Single gene";i:15;s:7:"2455634";i:16;s:9:"Dalk_3016";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4141109-4141188";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"4141298-4141649";i:10;s:1:"+";i:11;s:9:"Dalk_3259";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Dalk_3259";i:14;s:11:"single gene";i:15;s:7:"2455722";i:16;s:9:"Dalk_3259";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4141190-4141274";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"4141298-4141649";i:10;s:1:"+";i:11;s:9:"Dalk_3259";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Dalk_3259";i:14;s:11:"single gene";i:15;s:7:"2455722";i:16;s:9:"Dalk_3259";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4327336-4327486";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4326491-4327139";i:10;s:1:"-";i:11;s:9:"Dalk_3412";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Dalk_3412";i:14;s:11:"Single gene";i:15;s:7:"2455781";i:16;s:9:"Dalk_3412";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4557734-4557854";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4557992-4558187";i:10;s:1:"+";i:11;s:9:"Dalk_3605";i:12;s:0:"";i:13;s:9:"Dalk_3605";i:14;s:11:"Single gene";i:15;s:7:"2455836";i:16;s:9:"Dalk_3605";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5092093-5092277";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5092433-5093156";i:10;s:1:"+";i:11;s:9:"Dalk_4054";i:12;s:29:"Cytochrome c assembly protein";i:13;s:9:"Dalk_4054";i:14;s:6:"Operon";i:15;s:6:"504366";i:16;s:19:"Dalk_4054;Dalk_4055";i:17;s:40:"cytochrome complex assembly [GO:0017004]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5105387-5105573";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5105726-5107757";i:10;s:1:"+";i:11;s:9:"Dalk_4063";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Dalk_4063";i:14;s:11:"Single gene";i:15;s:7:"2455989";i:16;s:9:"Dalk_4063";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_011768.1";i:2;s:37:"Desulfatibacillum alkenivorans AK-01 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5865587-5865666";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"5864630-5865521";i:10;s:1:"-";i:11;s:9:"Dalk_4748";i:12;s:32:"Alpha/beta fold family hydrolase";i:13;s:9:"Dalk_4748";i:14;s:11:"single gene";i:15;s:7:"2456232";i:16;s:9:"Dalk_4748";i:17;s:0:"";i:18;s:15:"View Structure ";}}
