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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
33236-33411
(+)
yybP-ykoY
33445-34000 (+)
VS_0035
VS_0035
Single gene
DOOR ID:
2448748
VS_0035
View Structure
2
157190-157289
(+)
purine
157347-158718 (+)
VS_0162
VS_0162
Single gene
DOOR ID:
2448796
VS_0162
View Structure
3
308011-308188
(-)
lysine
306533-307901 (-)
VS_0316
Aspartokinase
VS_0316
Single gene
DOOR ID:
2448855
VS_0316
View Structure
4
699134-699217
(-)
fluoride
698246-698939 (-)
VS_0669
NifU-related domain containing protein
VS_0669
Operon
DOOR ID:
501144
VS_0668,
VS_0669
View Structure
5
1018192-1018344
(+)
MOCO
1019678-1020191 (+)
VS_0986
Molybdenum cofactor biosynthesis protein B
VS_0986
Operon
DOOR ID:
501199
VS_0986,
VS_0987
(moaC)
,
VS_0988
(moaD)
,
VS_0989
View Structure
6
1146178-1146263
(-)
c-di-GMP-I
1145459-1146050 (-)
VS_1087
Uncharacterized protein
VS_1087
operon
DOOR ID:
501211
VS_1086,
VS_1087
View Structure
7
1389787-1389921
(-)
glycine
1388287-1389658 (-)
VS_1291
Sodium:alanine symporter
VS_1291
Single gene
DOOR ID:
2449294
VS_1291
View Structure
8
2174996-2175173
(-)
lysine
2173290-2174892 (-)
VS_2027
VS_2027
Single gene
DOOR ID:
2449626
VS_2027
View Structure
9
2847575-2847705
(+)
cobalamin
2847798-2848983 (+)
VS_2661
Cobalt-precorrin-5B C(1)-methyltransferase (95) (Cobalt-precorrin-6A synthase)
VS_2661
Operon
DOOR ID:
501503
VS_2661,
VS_2662,
VS_2663
View Structure
10
2931678-2931797
(-)
TPP
2930631-2931624 (-)
tbpA
Thiamine-binding periplasmic protein
VS_2767
Single gene
DOOR ID:
2449924
VS_2767
(tbpA)
View Structure
11
3150383-3150586
(-)
cobalamin
3148582-3150343 (-)
VS_2998
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VS_2998
Operon
DOOR ID:
501557
VS_2996,
VS_2997,
VS_2998
View Structure
12
3244518-3244616
(-)
TPP
3242438-3244388 (-)
VS_3098
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VS_3098
Operon
DOOR ID:
501572
VS_3093
(thiH)
,
VS_3094
(thiG)
,
VS_3095,
VS_3096,
VS_3097
(thiE)
,
VS_3098
View Structure
Genome:
Vibrio splendidus LGP32 chromosome I
(
NC_011753.2
);
Phylum:
Gammaproteobacteria
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threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"699134-699217";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"698246-698939";i:10;s:1:"-";i:11;s:7:"VS_0669";i:12;s:38:"NifU-related domain containing protein";i:13;s:7:"VS_0669";i:14;s:6:"Operon";i:15;s:6:"501144";i:16;s:15:"VS_0668;VS_0669";i:17;s:41:"iron-sulfur cluster assembly [GO:0016226]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1018192-1018344";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1019678-1020191";i:10;s:1:"+";i:11;s:7:"VS_0986";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:7:"VS_0986";i:14;s:6:"Operon";i:15;s:6:"501199";i:16;s:43:"VS_0986;VS_0987(moaC);VS_0988(moaD);VS_0989";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1146178-1146263";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1145459-1146050";i:10;s:1:"-";i:11;s:7:"VS_1087";i:12;s:23:"Uncharacterized protein";i:13;s:7:"VS_1087";i:14;s:6:"operon";i:15;s:6:"501211";i:16;s:15:"VS_1086;VS_1087";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1389787-1389921";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1388287-1389658";i:10;s:1:"-";i:11;s:7:"VS_1291";i:12;s:24:"Sodium:alanine symporter";i:13;s:7:"VS_1291";i:14;s:11:"Single gene";i:15;s:7:"2449294";i:16;s:7:"VS_1291";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2174996-2175173";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2173290-2174892";i:10;s:1:"-";i:11;s:7:"VS_2027";i:12;s:0:"";i:13;s:7:"VS_2027";i:14;s:11:"Single gene";i:15;s:7:"2449626";i:16;s:7:"VS_2027";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2847575-2847705";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2847798-2848983";i:10;s:1:"+";i:11;s:7:"VS_2661";i:12;s:78:"Cobalt-precorrin-5B C(1)-methyltransferase (95) (Cobalt-precorrin-6A synthase)";i:13;s:7:"VS_2661";i:14;s:6:"Operon";i:15;s:6:"501503";i:16;s:23:"VS_2661;VS_2662;VS_2663";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; corrin biosynthetic process [GO:0046140]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2931678-2931797";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2930631-2931624";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:7:"VS_2767";i:14;s:11:"Single gene";i:15;s:7:"2449924";i:16;s:13:"VS_2767(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3150383-3150586";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3148582-3150343";i:10;s:1:"-";i:11;s:7:"VS_2998";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"VS_2998";i:14;s:6:"Operon";i:15;s:6:"501557";i:16;s:23:"VS_2996;VS_2997;VS_2998";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011753.2";i:2;s:36:"Vibrio splendidus LGP32 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3244518-3244616";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3242438-3244388";i:10;s:1:"-";i:11;s:7:"VS_3098";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"VS_3098";i:14;s:6:"Operon";i:15;s:6:"501572";i:16;s:65:"VS_3093(thiH);VS_3094(thiG);VS_3095;VS_3096;VS_3097(thiE);VS_3098";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
