Genome: Escherichia coli IAI39 (NC_011750.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 85948-86047 (-)TPP84933-85917 (-)tbpA

Thiamin transporter subunit periplasmic-binding component of ABC superfamily

DOOR ID: 499140
ECIAI39_0071 (thiQ),
ECIAI39_0072 (thiP),
ECIAI39_0073 (tbpA)
View Structure
2 799723-799867 (+)MOCO800865-801378 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 499280
ECIAI39_0757 (moaA),
ECIAI39_0758 (moaB),
ECIAI39_0759 (moaC),
ECIAI39_0760 (moaD),
ECIAI39_0761 (moaE)
View Structure
3 970849-970945 (+)TPP970979-971768 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 499313
ECIAI39_0913 (thiM),
ECIAI39_0914 (thiD),
ECIAI39_0915 (yegX),
ECIAI39_0916 (yegW)
View Structure
4 1298184-1298285 (-)yybP-ykoY1297486-1298053 (-)yebN

Probable manganese efflux pump MntP
ECIAI39_1231Single gene

DOOR ID: 2445781
ECIAI39_1231 (yebN) View Structure
5 3142381-3142571 (-)cobalamin3140471-3142316 (-)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 499695
ECIAI39_3022 (murI),
ECIAI39_3023 (btuB)
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6 3690215-3690363 (-)FMN3689457-3690111 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECIAI39_3538Single gene

DOOR ID: 2446601
ECIAI39_3538 (ribB) View Structure
7 4581363-4581463 (-)TPP4579386-4581282 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 499975
ECIAI39_4379 (thiH),
ECIAI39_4380 (thiG),
ECIAI39_4381 (thiS),
ECIAI39_4382 (thiF),
ECIAI39_4383 (thiE),
ECIAI39_4384 (thiC)
View Structure
8 4644280-4644476 (-)lysine4642838-4644188 (-)lysC

ECIAI39_4446Single gene

DOOR ID: 2446896
ECIAI39_4446 (lysC) View Structure
9 4816831-4816877 (+)mini-ykkC4816894-4817212 (+)sugE

ECIAI39_4615Single gene

DOOR ID: 2446962
ECIAI39_4615 (sugE) View Structure
10 4919645-4919760 (+)Mg sensor4919853-4922550 (+)mgtA

Magnesium transporter
ECIAI39_4717Single gene

DOOR ID: 2447007
ECIAI39_4717 (mgtA) View Structure