Genome: Escherichia coli 55989 (NC_011748.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 75931-76030 (-)TPP74916-75900 (-)tbpA

TbpA protein

DOOR ID: 498136
EC55989_0064 (thiQ),
EC55989_0065 (thiP),
EC55989_0066 (tbpA)
View Structure
2 876431-876575 (+)MOCO877573-878086 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 498288
EC55989_0824 (moaA),
EC55989_0825 (moaB),
EC55989_0826 (moaC),
EC55989_0827 (moaD),
EC55989_0828 (moaE)
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3 2055863-2055964 (+)yybP-ykoY2056094-2056661 (+)yebN

Probable manganese efflux pump MntP

DOOR ID: 498491
EC55989_1995 (yebN)
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4 2414238-2414334 (-)TPP2413414-2414203 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 498569
EC55989_2356 (yegW),
EC55989_2357 (yegX),
EC55989_2358 (thiD),
EC55989_2359 (thiM)
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5 3534659-3534807 (-)FMN3533901-3534555 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EC55989_3457Single gene

DOOR ID: 2444789
EC55989_3457 (ribB) View Structure
6 4553329-4553519 (+)cobalamin4553583-4555428 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 498972
EC55989_4451 (btuB),
EC55989_4452 (murI)
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7 4586039-4586139 (-)TPP4584062-4585958 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 498977
EC55989_4474 (thiH),
EC55989_4475 (thiG),
EC55989_4476 (thiS),
EC55989_4477 (thiF),
EC55989_4478 (thiE),
EC55989_4479 (thiC)
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8 4625418-4625614 (-)lysine4623976-4625326 (-)lysC

EC55989_4512Single gene

DOOR ID: 2445130
EC55989_4512 (lysC) View Structure
9 4822377-4822423 (+)mini-ykkC4822440-4822758 (+)sugE

EC55989_4705Single gene

DOOR ID: 2445211
EC55989_4705 (sugE) View Structure
10 4914287-4914402 (+)Mg sensor4914495-4917192 (+)mgtA

MgtA protein
EC55989_4800Single gene

DOOR ID: 2445253
EC55989_4800 (mgtA) View Structure