Genome: Escherichia coli ED1a (NC_011745.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 78144-78243 (-)TPP77129-78113 (-)tbpA

Thiamin transporter subunit periplasmic-binding component of ABC superfamily

DOOR ID: 497082
ECED1_0067 (thiQ),
ECED1_0068 (thiP),
ECED1_0069 (tbpA)
View Structure
2 775660-775804 (+)MOCO776802-777315 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 497213
ECED1_0746 (moaA),
ECED1_0747 (moaB),
ECED1_0748 (moaC),
ECED1_0749 (moaD),
ECED1_0750 (moaE)
View Structure
3 1974656-1974757 (+)yybP-ykoY1974887-1975454 (+)yebN

Probable manganese efflux pump MntP
ECED1_2024Single gene

DOOR ID: 2442648
ECED1_2024 (yebN) View Structure
4 2404554-2404650 (-)TPP2403730-2404519 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 497527
ECED1_2457 (yegW),
ECED1_2458 (yegX),
ECED1_2459 (thiD),
ECED1_2460 (thiM)
View Structure
5 3640589-3640737 (-)FMN3639831-3640485 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECED1_3715Single gene

DOOR ID: 2443126
ECED1_3715 (ribB) View Structure
6 4623991-4624181 (+)cobalamin4624245-4626084 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 497975
ECED1_4675 (btuB),
ECED1_4676 (murI)
View Structure
7 4655490-4655590 (-)TPP4653513-4655409 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 497981
ECED1_4696 (thiH),
ECED1_4697 (thiG),
ECED1_4698 (thiS),
ECED1_4699 (thiF),
ECED1_4700 (thiE),
ECED1_4701 (thiC)
View Structure
8 4697096-4697292 (-)lysine4695654-4697004 (-)lysC

ECED1_4739Single gene

DOOR ID: 2443440
ECED1_4739 (lysC) View Structure
9 4895146-4895192 (+)mini-ykkC4895209-4895527 (+)sugE

ECED1_4937Single gene

DOOR ID: 2443511
ECED1_4937 (sugE) View Structure
10 5034789-5034904 (+)Mg sensor5034997-5037694 (+)mgtA

Magnesium transporter
ECED1_5097Single gene

DOOR ID: 2443567
ECED1_5097 (mgtA) View Structure