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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79177-79276
(-)
TPP
78162-79146 (-)
tbpA
Thiamin transporter subunit periplasmic-binding component of ABC superfamily
ECS88_0073
Operon
DOOR ID:
495893
ECS88_0071
(thiQ)
,
ECS88_0072
(thiP)
,
ECS88_0073
(tbpA)
View Structure
2
819887-820031
(+)
MOCO
821029-821542 (+)
moaB
Molybdenum cofactor biosynthesis protein B
ECS88_0799
Operon
DOOR ID:
496028
ECS88_0798
(moaA)
,
ECS88_0799
(moaB)
,
ECS88_0800
(moaC)
,
ECS88_0801
(moaD)
,
ECS88_0802
(moaE)
View Structure
3
1860578-1860679
(+)
yybP-ykoY
1860809-1861376 (+)
yebN
Probable manganese efflux pump MntP
ECS88_1873
Single gene
DOOR ID:
2440193
ECS88_1873
(yebN)
View Structure
4
2221917-2222013
(-)
TPP
2221093-2221882 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECS88_2246
Operon
DOOR ID:
496278
ECS88_2243
(yegW)
,
ECS88_2244
(yegX)
,
ECS88_2245
(thiD)
,
ECS88_2246
(thiM)
View Structure
5
3407010-3407158
(-)
FMN
3406252-3406906 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECS88_3444
Single gene
DOOR ID:
2440594
ECS88_3444
(ribB)
View Structure
6
4399756-4399946
(+)
cobalamin
4400010-4401855 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECS88_4425
Operon
DOOR ID:
496700
ECS88_4425
(btuB)
,
ECS88_4426
(murI)
View Structure
7
4431260-4431360
(-)
TPP
4429283-4431179 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECS88_4455
Operon
DOOR ID:
496705
ECS88_4450
(thiH)
,
ECS88_4451
(thiG)
,
ECS88_4452
(thiS)
,
ECS88_4453
(thiF)
,
ECS88_4454
(thiE)
,
ECS88_4455
(thiC)
View Structure
8
4472701-4472897
(-)
lysine
4471259-4472609 (-)
lysC
Aspartokinase
ECS88_4497
Single gene
DOOR ID:
2440900
ECS88_4497
(lysC)
View Structure
9
4698996-4699042
(+)
mini-ykkC
4699059-4699377 (+)
sugE
ECS88_4736
Single gene
DOOR ID:
2440974
ECS88_4736
(sugE)
View Structure
10
4796850-4796965
(+)
Mg sensor
4797058-4799755 (+)
mgtA
Magnesium transporter
ECS88_4832
Single gene
DOOR ID:
2441011
ECS88_4832
(mgtA)
View Structure
Genome:
Escherichia coli S88
(
NC_011742.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3407010-3407158";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3406252-3406906";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"ECS88_3444";i:14;s:11:"Single gene";i:15;s:7:"2440594";i:16;s:16:"ECS88_3444(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4399756-4399946";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4400010-4401855";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"ECS88_4425";i:14;s:6:"Operon";i:15;s:6:"496700";i:16;s:33:"ECS88_4425(btuB);ECS88_4426(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4431260-4431360";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4429283-4431179";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"ECS88_4455";i:14;s:6:"Operon";i:15;s:6:"496705";i:16;s:101:"ECS88_4450(thiH);ECS88_4451(thiG);ECS88_4452(thiS);ECS88_4453(thiF);ECS88_4454(thiE);ECS88_4455(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4472701-4472897";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4471259-4472609";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:10:"ECS88_4497";i:14;s:11:"Single gene";i:15;s:7:"2440900";i:16;s:16:"ECS88_4497(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4698996-4699042";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4699059-4699377";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"ECS88_4736";i:14;s:11:"Single gene";i:15;s:7:"2440974";i:16;s:16:"ECS88_4736(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011742.1";i:2;s:21:"Escherichia coli S88 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4796850-4796965";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4797058-4799755";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:22:"Magnesium transporter ";i:13;s:10:"ECS88_4832";i:14;s:11:"Single gene";i:15;s:7:"2441011";i:16;s:16:"ECS88_4832(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
