About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
75918-76017
(-)
TPP
74903-75887 (-)
tbpA
ECIAI1_0068
Operon
DOOR ID:
495015
ECIAI1_0066
(thiQ)
,
ECIAI1_0067
(thiP)
,
ECIAI1_0068
(tbpA)
View Structure
2
865804-865948
(+)
MOCO
866946-867459 (+)
moaB
ECIAI1_0817
Operon
DOOR ID:
495163
ECIAI1_0816
(moaA)
,
ECIAI1_0817
(moaB)
,
ECIAI1_0818
(moaC)
,
ECIAI1_0819
(moaD)
,
ECIAI1_0820
(moaE)
View Structure
3
1951244-1951345
(+)
yybP-ykoY
1951475-1952042 (+)
yebN
Probable manganese efflux pump MntP
ECIAI1_1891
Operon
DOOR ID:
495345
ECIAI1_1890,
ECIAI1_1891
(yebN)
View Structure
4
2244878-2244974
(-)
TPP
2244054-2244843 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECIAI1_2178
Operon
DOOR ID:
495410
ECIAI1_2175
(yegW)
,
ECIAI1_2176
(yegX)
,
ECIAI1_2177
(thiD)
,
ECIAI1_2178
(thiM)
View Structure
5
3267396-3267544
(-)
FMN
3266638-3267292 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECIAI1_3189
Single gene
DOOR ID:
2439032
ECIAI1_3189
(ribB)
View Structure
6
4252615-4252805
(+)
cobalamin
4252869-4254714 (+)
btuB
ECIAI1_4176
Operon
DOOR ID:
495792
ECIAI1_4176
(btuB)
,
ECIAI1_4177
(murI)
View Structure
7
4285325-4285425
(-)
TPP
4283348-4285244 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECIAI1_4209
Operon
DOOR ID:
495797
ECIAI1_4204
(thiH)
,
ECIAI1_4205
(thiG)
,
ECIAI1_4206
(thiS)
,
ECIAI1_4207
(thiF)
,
ECIAI1_4208
(thiE)
,
ECIAI1_4209
(thiC)
View Structure
8
4324707-4324903
(-)
lysine
4323265-4324615 (-)
lysC
ECIAI1_4249
Single gene
DOOR ID:
2439370
ECIAI1_4249
(lysC)
View Structure
9
4461449-4461495
(+)
mini-ykkC
4461512-4461830 (+)
sugE
ECIAI1_4385
Single gene
DOOR ID:
2439426
ECIAI1_4385
(sugE)
View Structure
10
4552031-4552146
(+)
Mg sensor
4552239-4554936 (+)
mgtA
ECIAI1_4474
Single gene
DOOR ID:
2439466
ECIAI1_4474
(mgtA)
View Structure
Genome:
Escherichia coli IAI1
(
NC_011741.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"75918-76017";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"74903-75887";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:11:"ECIAI1_0068";i:14;s:6:"Operon";i:15;s:6:"495015";i:16;s:53:"ECIAI1_0066(thiQ);ECIAI1_0067(thiP);ECIAI1_0068(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"865804-865948";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"866946-867459";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:11:"ECIAI1_0817";i:14;s:6:"Operon";i:15;s:6:"495163";i:16;s:89:"ECIAI1_0816(moaA);ECIAI1_0817(moaB);ECIAI1_0818(moaC);ECIAI1_0819(moaD);ECIAI1_0820(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1951244-1951345";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1951475-1952042";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:11:"ECIAI1_1891";i:14;s:6:"Operon";i:15;s:6:"495345";i:16;s:29:"ECIAI1_1890;ECIAI1_1891(yebN)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2244878-2244974";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2244054-2244843";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"ECIAI1_2178";i:14;s:6:"Operon";i:15;s:6:"495410";i:16;s:71:"ECIAI1_2175(yegW);ECIAI1_2176(yegX);ECIAI1_2177(thiD);ECIAI1_2178(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3267396-3267544";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3266638-3267292";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"ECIAI1_3189";i:14;s:11:"Single gene";i:15;s:7:"2439032";i:16;s:17:"ECIAI1_3189(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4252615-4252805";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4252869-4254714";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:11:"ECIAI1_4176";i:14;s:6:"Operon";i:15;s:6:"495792";i:16;s:35:"ECIAI1_4176(btuB);ECIAI1_4177(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4285325-4285425";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4283348-4285244";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"ECIAI1_4209";i:14;s:6:"Operon";i:15;s:6:"495797";i:16;s:107:"ECIAI1_4204(thiH);ECIAI1_4205(thiG);ECIAI1_4206(thiS);ECIAI1_4207(thiF);ECIAI1_4208(thiE);ECIAI1_4209(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4324707-4324903";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4323265-4324615";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:11:"ECIAI1_4249";i:14;s:11:"Single gene";i:15;s:7:"2439370";i:16;s:17:"ECIAI1_4249(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4461449-4461495";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4461512-4461830";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:11:"ECIAI1_4385";i:14;s:11:"Single gene";i:15;s:7:"2439426";i:16;s:17:"ECIAI1_4385(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011741.1";i:2;s:22:"Escherichia coli IAI1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4552031-4552146";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4552239-4554936";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:11:"ECIAI1_4474";i:14;s:11:"Single gene";i:15;s:7:"2439466";i:16;s:17:"ECIAI1_4474(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
