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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
707433-707604
(+)
ydaO-yuaA
707702-708542 (+)
PCC7424_0640
Nitrate ABC transporter; inner membrane subunit
PCC7424_0640
Single gene
DOOR ID:
2433519
PCC7424_0640
View Structure
2
2139095-2139191
(-)
TPP
2137707-2139087 (-)
PCC7424_1908
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PCC7424_1908
Single gene
DOOR ID:
2434213
PCC7424_1908
View Structure
3
2301537-2301596
(+)
glutamine
2301636-2302065 (+)
PCC7424_2046
PCC7424_2046
Single gene
DOOR ID:
2434300
PCC7424_2046
View Structure
4
2649560-2649636
(+)
glutamine
2649678-2649903 (+)
PCC7424_2377
PCC7424_2377
Single gene
DOOR ID:
2434474
PCC7424_2377
View Structure
5
3786779-3786925
(-)
ydaO-yuaA
3783583-3786391 (-)
PCC7424_3388
ATPase; P-type (Transporting); HAD superfamily; subfamily IC
PCC7424_3388
Single gene
DOOR ID:
2435042
PCC7424_3388
View Structure
6
4250877-4251025
(+)
cobalamin
4251129-4251879 (+)
PCC7424_3820
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
PCC7424_3820
Operon
DOOR ID:
493814
PCC7424_3820,
PCC7424_3821
View Structure
7
4627294-4627352
(+)
glutamine
4627387-4627543 (+)
PCC7424_4179
PCC7424_4179
Single gene
DOOR ID:
2435509
PCC7424_4179
View Structure
8
5496188-5496344
(+)
ydaO-yuaA
5496786-5498124 (+)
PCC7424_4948
Citrate transporter
PCC7424_4948
Operon
DOOR ID:
493990
PCC7424_4948,
PCC7424_4949,
PCC7424_4950
View Structure
9
5815888-5816063
(+)
ydaO-yuaA
5816208-5816400 (+)
PCC7424_5237
PCC7424_5237
Single gene
DOOR ID:
2436152
PCC7424_5237
View Structure
Genome:
Cyanothece sp. PCC 7424
(
NC_011729.1
);
Phylum:
Cyanobacteria/Melainabacteria group
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