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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1302424-1302535
(-)
glycine
1301227-1302361 (-)
Msil_1217
Glycine cleavage system T protein
Msil_1217
Operon
DOOR ID:
490681
Msil_1214,
Msil_1215,
Msil_1216,
Msil_1217
View Structure
2
1302539-1302637
(-)
glycine
1301227-1302361 (-)
Msil_1217
Glycine cleavage system T protein
Msil_1217
Operon
DOOR ID:
490681
Msil_1214,
Msil_1215,
Msil_1216,
Msil_1217
View Structure
3
1530819-1530941
(+)
TPP
1531003-1532023 (+)
Msil_1414
Glycine oxidase ThiO
Msil_1414
Operon
DOOR ID:
490715
Msil_1414,
Msil_1415,
Msil_1416,
Msil_1417
View Structure
4
2436566-2436638
(-)
cobalamin
2436295-2436508 (-)
Msil_2250
Msil_2250
Single gene
DOOR ID:
2427145
Msil_2250
View Structure
5
2644792-2644866
(-)
SAH
2642556-2644293 (-)
Msil_2426
Sulfite reductase [NADPH] hemoprotein beta-component (SiR-HP) (SiRHP)
Msil_2426
Operon
DOOR ID:
490892
Msil_2424,
Msil_2425,
Msil_2426
View Structure
6
2840436-2840544
(+)
ykkC-yxkD
2840606-2841680 (+)
Msil_2601
ABC transporter periplasmic binding protein; urea carboxylase region
Msil_2601
Operon
DOOR ID:
490922
Msil_2601,
Msil_2602,
Msil_2603
View Structure
7
2843284-2843332
(+)
mini-ykkC
2843355-2844168 (+)
Msil_2604
Msil_2604
Operon
DOOR ID:
490923
Msil_2604,
Msil_2605,
Msil_2606,
Msil_2607
View Structure
8
3314090-3314189
(-)
TPP
3312190-3314020 (-)
Msil_2999
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Msil_2999
Single gene
DOOR ID:
2427480
Msil_2999
View Structure
9
3591898-3592104
(-)
cobalamin
3590738-3591788 (-)
Msil_3269
Cobalamin biosynthesis protein CobW
Msil_3269
Operon
DOOR ID:
491049
Msil_3267,
Msil_3268,
Msil_3269
View Structure
Genome:
Methylocella silvestris BL2
(
NC_011666.1
);
Phylum:
Alphaproteobacteria
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hydrogen sulfide biosynthetic process [GO:0070814]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011666.1";i:2;s:28:"Methylocella silvestris BL2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2840436-2840544";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2840606-2841680";i:10;s:1:"+";i:11;s:9:"Msil_2601";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:9:"Msil_2601";i:14;s:6:"Operon";i:15;s:6:"490922";i:16;s:29:"Msil_2601;Msil_2602;Msil_2603";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011666.1";i:2;s:28:"Methylocella silvestris BL2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2843284-2843332";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2843355-2844168";i:10;s:1:"+";i:11;s:9:"Msil_2604";i:12;s:0:"";i:13;s:9:"Msil_2604";i:14;s:6:"Operon";i:15;s:6:"490923";i:16;s:39:"Msil_2604;Msil_2605;Msil_2606;Msil_2607";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011666.1";i:2;s:28:"Methylocella silvestris BL2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3314090-3314189";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3312190-3314020";i:10;s:1:"-";i:11;s:9:"Msil_2999";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Msil_2999";i:14;s:11:"Single gene";i:15;s:7:"2427480";i:16;s:9:"Msil_2999";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011666.1";i:2;s:28:"Methylocella silvestris BL2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3591898-3592104";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3590738-3591788";i:10;s:1:"-";i:11;s:9:"Msil_3269";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:9:"Msil_3269";i:14;s:6:"Operon";i:15;s:6:"491049";i:16;s:29:"Msil_3267;Msil_3268;Msil_3269";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}}
