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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
160704-160933
(-)
FMN
159857-160511 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Sbal223_0138
Single gene
DOOR ID:
2423834
Sbal223_0138
(ribB)
View Structure
2
321575-321708
(+)
MOCO
322772-323249 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sbal223_0282
Operon
DOOR ID:
489785
Sbal223_0281
(moaA)
,
Sbal223_0282
(moaC)
View Structure
3
1002912-1003062
(+)
glycine
1003311-1004670 (+)
Sbal223_0857
Amino acid carrier protein
Sbal223_0857
Single gene
DOOR ID:
2424173
Sbal223_0857
View Structure
4
1178533-1178698
(+)
cobalamin
1178797-1179691 (+)
Sbal223_0997
ABC transporter related
Sbal223_0997
Single gene
DOOR ID:
2424255
Sbal223_0997
View Structure
5
1519289-1519377
(+)
c-di-GMP-I
1519492-1522099 (+)
Sbal223_1284
Glycoside hydrolase family 18
Sbal223_1284
single gene
DOOR ID:
2424394
Sbal223_1284
View Structure
6
1762777-1762973
(+)
lysine
1763052-1764621 (+)
Sbal223_1513
Na+/H+ antiporter NhaC
Sbal223_1513
Single gene
DOOR ID:
2424475
Sbal223_1513
View Structure
7
1791552-1791600
(+)
mini-ykkC
1791615-1791930 (+)
Sbal223_1533
Sbal223_1533
Single gene
DOOR ID:
2424487
Sbal223_1533
View Structure
8
2390249-2390347
(+)
TPP
2390547-2392671 (+)
Sbal223_2024
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Sbal223_2024
Operon
DOOR ID:
490070
Sbal223_2024,
Sbal223_2025,
Sbal223_2026,
Sbal223_2027,
Sbal223_2028
(thiG)
,
Sbal223_2029
(thiH)
View Structure
9
2960746-2960871
(-)
TPP
2958456-2960691 (-)
Sbal223_2484
TonB-dependent receptor
Sbal223_2484
Single gene
DOOR ID:
2424989
Sbal223_2484
View Structure
10
4025149-4025248
(-)
c-di-GMP-I
4023580-4025026 (-)
Sbal223_3390
GlcNAc-binding protein A
Sbal223_3390
single gene
DOOR ID:
2425447
Sbal223_3390
View Structure
11
4025473-4025576
(+)
yybP-ykoY
4025659-4026214 (+)
Sbal223_3391
Sbal223_3391
Single gene
DOOR ID:
2425448
Sbal223_3391
View Structure
12
4246447-4246681
(-)
cobalamin
4244376-4246338 (-)
Sbal223_3576
TonB-dependent receptor
Sbal223_3576
Single gene
DOOR ID:
2425563
Sbal223_3576
View Structure
13
4339285-4339459
(-)
lysine
4337778-4339134 (-)
Sbal223_3658
Aspartokinase
Sbal223_3658
Operon
DOOR ID:
490340
Sbal223_3657,
Sbal223_3658
View Structure
Genome:
Shewanella baltica OS223
(
NC_011663.1
);
Phylum:
Gammaproteobacteria
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chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1762777-1762973";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1763052-1764621";i:10;s:1:"+";i:11;s:12:"Sbal223_1513";i:12;s:22:"Na+/H+ antiporter NhaC";i:13;s:12:"Sbal223_1513";i:14;s:11:"Single gene";i:15;s:7:"2424475";i:16;s:12:"Sbal223_1513";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1791552-1791600";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1791615-1791930";i:10;s:1:"+";i:11;s:12:"Sbal223_1533";i:12;s:0:"";i:13;s:12:"Sbal223_1533";i:14;s:11:"Single gene";i:15;s:7:"2424487";i:16;s:12:"Sbal223_1533";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2390249-2390347";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2390547-2392671";i:10;s:1:"+";i:11;s:12:"Sbal223_2024";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"Sbal223_2024";i:14;s:6:"Operon";i:15;s:6:"490070";i:16;s:89:"Sbal223_2024;Sbal223_2025;Sbal223_2026;Sbal223_2027;Sbal223_2028(thiG);Sbal223_2029(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2960746-2960871";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2958456-2960691";i:10;s:1:"-";i:11;s:12:"Sbal223_2484";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Sbal223_2484";i:14;s:11:"Single gene";i:15;s:7:"2424989";i:16;s:12:"Sbal223_2484";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4025149-4025248";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4023580-4025026";i:10;s:1:"-";i:11;s:12:"Sbal223_3390";i:12;s:24:"GlcNAc-binding protein A";i:13;s:12:"Sbal223_3390";i:14;s:11:"single gene";i:15;s:7:"2425447";i:16;s:12:"Sbal223_3390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4025473-4025576";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4025659-4026214";i:10;s:1:"+";i:11;s:12:"Sbal223_3391";i:12;s:0:"";i:13;s:12:"Sbal223_3391";i:14;s:11:"Single gene";i:15;s:7:"2425448";i:16;s:12:"Sbal223_3391";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4246447-4246681";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4244376-4246338";i:10;s:1:"-";i:11;s:12:"Sbal223_3576";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Sbal223_3576";i:14;s:11:"Single gene";i:15;s:7:"2425563";i:16;s:12:"Sbal223_3576";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011663.1";i:2;s:25:"Shewanella baltica OS223 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4339285-4339459";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4337778-4339134";i:10;s:1:"-";i:11;s:12:"Sbal223_3658";i:12;s:14:"Aspartokinase ";i:13;s:12:"Sbal223_3658";i:14;s:6:"Operon";i:15;s:6:"490340";i:16;s:25:"Sbal223_3657;Sbal223_3658";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
