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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
655401-655465
(+)
SAH
655656-656538 (+)
Tmz1t_0578
Tmz1t_0578
Single gene
DOOR ID:
2422812
Tmz1t_0578
View Structure
2
682815-682889
(+)
SAH
682964-686663 (+)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Tmz1t_0606
Single gene
DOOR ID:
2422824
Tmz1t_0606
(metH)
View Structure
3
1252786-1252979
(+)
cobalamin
1253027-1253837 (+)
Tmz1t_1140
Cob(II)yrinic acid a;c-diamide reductase
Tmz1t_1140
Single gene
DOOR ID:
2422982
Tmz1t_1140
View Structure
4
2401105-2401183
(-)
sam-alpha
2400756-2400924 (-)
Tmz1t_2124
Tmz1t_2124
Operon
DOOR ID:
489333
Tmz1t_2123,
Tmz1t_2124
View Structure
5
3078596-3078803
(-)
cobalamin
3077923-3078439 (-)
Tmz1t_2843
GCN5-related N-acetyltransferase
Tmz1t_2843
Single gene
DOOR ID:
2423440
Tmz1t_2843
View Structure
6
3502129-3502215
(+)
glycine
3502421-3503513 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tmz1t_3205
Operon
DOOR ID:
489541
Tmz1t_3205
(gcvT)
,
Tmz1t_3206,
Tmz1t_3207
View Structure
7
3788881-3788976
(+)
TPP
3790036-3791956 (+)
Tmz1t_3464
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Tmz1t_3464
Single gene
DOOR ID:
2423588
Tmz1t_3464
View Structure
8
4107005-4107229
(+)
cobalamin
4107497-4108136 (+)
Tmz1t_3736
Tmz1t_3736
Operon
DOOR ID:
489659
Tmz1t_3736,
Tmz1t_3737,
Tmz1t_3738,
Tmz1t_3739,
Tmz1t_3740
(cbiD)
,
Tmz1t_3741,
Tmz1t_3742,
Tmz1t_3743,
Tmz1t_3744
View Structure
9
4128805-4129041
(-)
cobalamin
4126832-4128671 (-)
Tmz1t_3757
TonB-dependent receptor plug
Tmz1t_3757
Operon
DOOR ID:
489661
Tmz1t_3755,
Tmz1t_3756,
Tmz1t_3757
View Structure
10
4235689-4235793
(+)
SAH
4235895-4237311 (+)
Tmz1t_3842
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Tmz1t_3842
Operon
DOOR ID:
489678
Tmz1t_3842,
Tmz1t_3843,
Tmz1t_3844
View Structure
Genome:
Thauera sp. MZ1T
(
NC_011662.2
);
Phylum:
Betaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"655401-655465";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"655656-656538";i:10;s:1:"+";i:11;s:10:"Tmz1t_0578";i:12;s:0:"";i:13;s:10:"Tmz1t_0578";i:14;s:11:"Single gene";i:15;s:7:"2422812";i:16;s:10:"Tmz1t_0578";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"682815-682889";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"682964-686663";i:10;s:1:"+";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:10:"Tmz1t_0606";i:14;s:11:"Single gene";i:15;s:7:"2422824";i:16;s:16:"Tmz1t_0606(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1252786-1252979";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1253027-1253837";i:10;s:1:"+";i:11;s:10:"Tmz1t_1140";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:10:"Tmz1t_1140";i:14;s:11:"Single gene";i:15;s:7:"2422982";i:16;s:10:"Tmz1t_1140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2401105-2401183";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"2400756-2400924";i:10;s:1:"-";i:11;s:10:"Tmz1t_2124";i:12;s:0:"";i:13;s:10:"Tmz1t_2124";i:14;s:6:"Operon";i:15;s:6:"489333";i:16;s:21:"Tmz1t_2123;Tmz1t_2124";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3078596-3078803";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3077923-3078439";i:10;s:1:"-";i:11;s:10:"Tmz1t_2843";i:12;s:32:"GCN5-related N-acetyltransferase";i:13;s:10:"Tmz1t_2843";i:14;s:11:"Single gene";i:15;s:7:"2423440";i:16;s:10:"Tmz1t_2843";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3502129-3502215";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3502421-3503513";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"Tmz1t_3205";i:14;s:6:"Operon";i:15;s:6:"489541";i:16;s:38:"Tmz1t_3205(gcvT);Tmz1t_3206;Tmz1t_3207";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3788881-3788976";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3790036-3791956";i:10;s:1:"+";i:11;s:10:"Tmz1t_3464";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Tmz1t_3464";i:14;s:11:"Single gene";i:15;s:7:"2423588";i:16;s:10:"Tmz1t_3464";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4107005-4107229";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4107497-4108136";i:10;s:1:"+";i:11;s:10:"Tmz1t_3736";i:12;s:0:"";i:13;s:10:"Tmz1t_3736";i:14;s:6:"Operon";i:15;s:6:"489659";i:16;s:104:"Tmz1t_3736;Tmz1t_3737;Tmz1t_3738;Tmz1t_3739;Tmz1t_3740(cbiD);Tmz1t_3741;Tmz1t_3742;Tmz1t_3743;Tmz1t_3744";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4128805-4129041";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4126832-4128671";i:10;s:1:"-";i:11;s:10:"Tmz1t_3757";i:12;s:28:"TonB-dependent receptor plug";i:13;s:10:"Tmz1t_3757";i:14;s:6:"Operon";i:15;s:6:"489661";i:16;s:32:"Tmz1t_3755;Tmz1t_3756;Tmz1t_3757";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011662.2";i:2;s:17:"Thauera sp. MZ1T ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4235689-4235793";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4235895-4237311";i:10;s:1:"+";i:11;s:10:"Tmz1t_3842";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Tmz1t_3842";i:14;s:6:"Operon";i:15;s:6:"489678";i:16;s:32:"Tmz1t_3842;Tmz1t_3843;Tmz1t_3844";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
