Genome: Escherichia coli O127:H6 str. E2348/69 (NC_011601.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 82850-82949 (-)TPP81835-82819 (-)tbpA

Thiamin transporter subunit TbpA

DOOR ID: 485645
E2348C_0072 (thiQ),
E2348C_0073 (thiP),
E2348C_0074 (tbpA)
View Structure
2 2004429-2004530 (+)yybP-ykoY2004660-2005227 (+)yebN

Probable manganese efflux pump MntP
E2348C_1945Single gene

DOOR ID: 2417314
E2348C_1945 (yebN) View Structure
3 2181588-2181763 (-)cobalamin2180932-2181430 (-)E2348C_2127

E2348C_2127Single gene

DOOR ID: 2417382
E2348C_2127 View Structure
4 2314192-2314288 (-)TPP2313377-2314157 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 486037
E2348C_2246 (yegW),
E2348C_2247 (yegX),
E2348C_2248 (thiD),
E2348C_2249 (thiM)
View Structure
5 3475665-3475813 (-)FMN3474907-3475561 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
E2348C_3340Single gene

DOOR ID: 2417737
E2348C_3340 (ribB) View Structure
6 4493987-4494177 (+)cobalamin4494241-4496125 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 486441
E2348C_4282 (btuB),
E2348C_4283 (murI)
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7 4525535-4525635 (-)TPP4523558-4525454 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 486446
E2348C_4296 (thiH),
E2348C_4297 (thiG),
E2348C_4298 (thiS),
E2348C_4299 (thiF),
E2348C_4300 (thiE),
E2348C_4301 (thiC)
View Structure