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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
156745-156916
(+)
glmS
156978-158781 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Aflv_0152
Single gene
DOOR ID:
2411261
Aflv_0152
(glmS)
View Structure
2
242187-242288
(+)
purine
242368-243904 (+)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Aflv_0225
Single gene
DOOR ID:
2411280
Aflv_0225
(guaA)
View Structure
3
251859-251960
(+)
purine
252067-252556 (+)
purE
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Aflv_0228
Operon
DOOR ID:
483256
Aflv_0228
(purE)
,
Aflv_0229
(purK)
,
Aflv_0230
(purB)
,
Aflv_0231
(purC)
,
Aflv_0232
(purS)
,
Aflv_0233
(purQ)
,
Aflv_0234
(purL)
,
Aflv_0235
(purF)
,
Aflv_0236
(purM)
,
Aflv_0237
(purN)
,
Aflv_0238
(purH)
,
Aflv_0239
(purD)
View Structure
4
282686-282787
(-)
purine
280949-282662 (-)
adeC
Adenine deaminase (Adenase) (Adenine aminase)
Aflv_0257
Operon
DOOR ID:
483262
Aflv_0256,
Aflv_0257
(adeC)
View Structure
5
368638-368724
(+)
c-di-GMP-I
368828-370520 (+)
tlpA-1
Chemotaxis sensor protein (CHASE 3; HAMP; MCP domains)
Aflv_0339
single gene
DOOR ID:
2411313
Aflv_0339
(tlpA-1)
View Structure
6
433924-434125
(-)
cobalamin
431533-433810 (-)
nrdE
Ribonucleoside-diphosphate reductase
Aflv_0393
Single gene
DOOR ID:
2411335
Aflv_0393
(nrdE)
View Structure
7
451136-451244
(+)
SAM
451364-452570 (+)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Aflv_0414
Single gene
DOOR ID:
2411341
Aflv_0414
(metK)
View Structure
8
927747-927835
(+)
glycine
927976-929071 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Aflv_0915
Operon
DOOR ID:
483403
Aflv_0915
(gcvT)
,
Aflv_0916
(gcvPA)
,
Aflv_0917
(gcvPB)
View Structure
9
1017521-1017653
(+)
FMN
1017794-1018871 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Aflv_1015
Operon
DOOR ID:
483424
Aflv_1015
(ribD)
,
Aflv_1016
(ribE)
,
Aflv_1017
(ribA)
,
Aflv_1018
(ribH)
View Structure
10
1042516-1042708
(+)
cobalamin
1042912-1043869 (+)
Aflv_1041
ABC-type cobalamin/Fe3+-siderophore transport system; periplasmic component
Aflv_1041
Operon
DOOR ID:
483430
Aflv_1041,
Aflv_1042,
Aflv_1043,
Aflv_1044
(cobD)
,
Aflv_1045
(cobD)
,
Aflv_1046
(cobU)
,
Aflv_1047
(cobS)
,
Aflv_1048
(cobC)
View Structure
11
1360065-1360180
(+)
TPP
1360234-1361029 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Aflv_1345
Operon
DOOR ID:
483489
Aflv_1345
(thiM)
,
Aflv_1346
(thiE)
,
Aflv_1347
View Structure
12
1599486-1599568
(-)
c-di-GMP-I
1598533-1598791 (-)
sspH
Small; acid-soluble spore protein H (SASP H)
Aflv_1599
operon
DOOR ID:
483548
Aflv_1599
(sspH)
,
Aflv_1600
View Structure
13
1641256-1641370
(+)
TPP
1641469-1643179 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Aflv_1650
Single gene
DOOR ID:
2411700
Aflv_1650
(thiC)
View Structure
14
1948341-1948385
(-)
PreQ1
1947598-1948264 (-)
Aflv_1971
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
Aflv_1971
Operon
DOOR ID:
483604
Aflv_1969,
Aflv_1970,
Aflv_1971
View Structure
15
1964521-1964699
(+)
lysine
1964748-1966269 (+)
Aflv_1989
Amino acid transporter
Aflv_1989
Single gene
DOOR ID:
2411790
Aflv_1989
View Structure
16
1973328-1973435
(-)
SAM
1972046-1973267 (-)
mtnW
2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
Aflv_1997
Operon
DOOR ID:
483609
Aflv_1994,
Aflv_1995
(mtnB)
,
Aflv_1996
(mtnX)
,
Aflv_1997
(mtnW)
View Structure
17
1975676-1975775
(+)
SAM
1975775-1977017 (+)
mtnK
Methylthioribose kinase (MTR kinase) (00)
Aflv_2000
Operon
DOOR ID:
483610
Aflv_2000
(mtnK)
,
Aflv_2001
(mtnA)
,
Aflv_2002
(rbsB)
,
Aflv_2003
(rbsA)
,
Aflv_2004
(rbsC)
View Structure
18
2054094-2054201
(-)
SAM
2052927-2054031 (-)
Aflv_2067
Cystathionine gamma-synthase(O-succinylhomoserine (Thiol)-lyase)
Aflv_2067
Operon
DOOR ID:
483626
Aflv_2066,
Aflv_2067
View Structure
19
2138823-2138924
(+)
SAM
2138987-2140841 (+)
Aflv_2165
5;10-methylenetetrahydrofolate reductase containing methyltransferase and reductase domains
Aflv_2165
Operon
DOOR ID:
483644
Aflv_2165,
Aflv_2166
View Structure
20
2160993-2161178
(-)
cobalamin
2160485-2160857 (-)
cbiW
2Fe-2S ferredoxin
Aflv_2185
Operon
DOOR ID:
483645
Aflv_2167,
Aflv_2168,
Aflv_2169,
Aflv_2170,
Aflv_2171,
Aflv_2172,
Aflv_2173,
Aflv_2174,
Aflv_2175,
Aflv_2176
(cbiD)
,
Aflv_2177,
Aflv_2178,
Aflv_2179,
Aflv_2180,
Aflv_2181,
Aflv_2182,
Aflv_2183,
Aflv_2184,
Aflv_2185
(cbiW)
View Structure
21
2193384-2193485
(+)
purine
2193759-2194377 (+)
Aflv_2212
Dienelactone hydrolase family protein
Aflv_2212
Operon
DOOR ID:
483649
Aflv_2212,
Aflv_2213
View Structure
22
2300177-2300284
(-)
TPP
2299393-2300089 (-)
tenA
Aminopyrimidine aminohydrolase
Aflv_2320
Operon
DOOR ID:
483668
Aflv_2311,
Aflv_2312
(moeB)
,
Aflv_2313
(thiG)
,
Aflv_2314
(thiS)
,
Aflv_2315
(goxB)
,
Aflv_2316
(tenI)
,
Aflv_2317,
Aflv_2318,
Aflv_2319,
Aflv_2320
(tenA)
View Structure
23
2445193-2445298
(-)
SAM
2444092-2445121 (-)
Aflv_2468
Methionine import ATP-binding protein MetN
Aflv_2468
Operon
DOOR ID:
483703
Aflv_2465,
Aflv_2466,
Aflv_2467,
Aflv_2468
View Structure
Genome:
Anoxybacillus flavithermus WK1
(
NC_011567.1
);
Phylum:
Firmicutes
a:24:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"156745-156916";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"156978-158781";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Aflv_0152";i:14;s:11:"Single gene";i:15;s:7:"2411261";i:16;s:15:"Aflv_0152(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"242187-242288";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"242368-243904";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:9:"Aflv_0225";i:14;s:11:"Single gene";i:15;s:7:"2411280";i:16;s:15:"Aflv_0225(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"251859-251960";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"252067-252556";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:117:"N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)";i:13;s:9:"Aflv_0228";i:14;s:6:"Operon";i:15;s:6:"483256";i:16;s:191:"Aflv_0228(purE);Aflv_0229(purK);Aflv_0230(purB);Aflv_0231(purC);Aflv_0232(purS);Aflv_0233(purQ);Aflv_0234(purL);Aflv_0235(purF);Aflv_0236(purM);Aflv_0237(purN);Aflv_0238(purH);Aflv_0239(purD)";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"282686-282787";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"280949-282662";i:10;s:1:"-";i:11;s:4:"adeC";i:12;s:46:"Adenine deaminase (Adenase) (Adenine aminase) ";i:13;s:9:"Aflv_0257";i:14;s:6:"Operon";i:15;s:6:"483262";i:16;s:25:"Aflv_0256;Aflv_0257(adeC)";i:17;s:38:"adenine catabolic process [GO:0006146]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"368638-368724";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"368828-370520";i:10;s:1:"+";i:11;s:6:"tlpA-1";i:12;s:54:"Chemotaxis sensor protein (CHASE 3; HAMP; MCP domains)";i:13;s:9:"Aflv_0339";i:14;s:11:"single gene";i:15;s:7:"2411313";i:16;s:17:"Aflv_0339(tlpA-1)";i:17;s:23:"chemotaxis [GO:0006935]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"433924-434125";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"431533-433810";i:10;s:1:"-";i:11;s:4:"nrdE";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Aflv_0393";i:14;s:11:"Single gene";i:15;s:7:"2411335";i:16;s:15:"Aflv_0393(nrdE)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"451136-451244";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"451364-452570";i:10;s:1:"+";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"Aflv_0414";i:14;s:11:"Single gene";i:15;s:7:"2411341";i:16;s:15:"Aflv_0414(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"927747-927835";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"927976-929071";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Aflv_0915";i:14;s:6:"Operon";i:15;s:6:"483403";i:16;s:49:"Aflv_0915(gcvT);Aflv_0916(gcvPA);Aflv_0917(gcvPB)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1017521-1017653";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1017794-1018871";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Aflv_1015";i:14;s:6:"Operon";i:15;s:6:"483424";i:16;s:63:"Aflv_1015(ribD);Aflv_1016(ribE);Aflv_1017(ribA);Aflv_1018(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1042516-1042708";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1042912-1043869";i:10;s:1:"+";i:11;s:9:"Aflv_1041";i:12;s:75:"ABC-type cobalamin/Fe3+-siderophore transport system; periplasmic component";i:13;s:9:"Aflv_1041";i:14;s:6:"Operon";i:15;s:6:"483430";i:16;s:109:"Aflv_1041;Aflv_1042;Aflv_1043;Aflv_1044(cobD);Aflv_1045(cobD);Aflv_1046(cobU);Aflv_1047(cobS);Aflv_1048(cobC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1360065-1360180";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1360234-1361029";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Aflv_1345";i:14;s:6:"Operon";i:15;s:6:"483489";i:16;s:41:"Aflv_1345(thiM);Aflv_1346(thiE);Aflv_1347";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1599486-1599568";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1598533-1598791";i:10;s:1:"-";i:11;s:4:"sspH";i:12;s:44:"Small; 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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:23;a:19:{i:0;i:23;i:1;s:11:"NC_011567.1";i:2;s:31:"Anoxybacillus flavithermus WK1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2445193-2445298";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2444092-2445121";i:10;s:1:"-";i:11;s:9:"Aflv_2468";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:9:"Aflv_2468";i:14;s:6:"Operon";i:15;s:6:"483703";i:16;s:39:"Aflv_2465;Aflv_2466;Aflv_2467;Aflv_2468";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}}