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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
332573-332783
(-)
cobalamin
330455-332483 (-)
nrdD
Anaerobic ribonucleoside-triphosphate reductase
RC1_0319
Single gene
DOOR ID:
2404091
RC1_0319
(nrdD)
View Structure
2
332896-333110
(+)
cobalamin
333223-334810 (+)
cobQ
Cobyric acid synthase
RC1_0321
Operon
DOOR ID:
479934
RC1_0321
(cobQ)
,
RC1_0322
(cobD)
,
RC1_0323
(cobU)
View Structure
3
717972-718202
(-)
cobalamin
715745-717737 (-)
btuB
Vitamin B12 transporter BtuB
RC1_0665
Operon
DOOR ID:
479993
RC1_0661,
RC1_0662
(fecE)
,
RC1_0663
(hmuU)
,
RC1_0664,
RC1_0665
(btuB)
View Structure
4
2663000-2663077
(+)
sam-alpha
2663150-2664407 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RC1_2590
Single gene
DOOR ID:
2405057
RC1_2590
(metZ)
View Structure
5
3179373-3179475
(-)
TPP
3178164-3179370 (-)
thiO
Glycine oxidase ThiO (9)
RC1_3102
Operon
DOOR ID:
480451
RC1_3100
(thiG)
,
RC1_3101
(thiS)
,
RC1_3102
(thiO)
View Structure
6
3781356-3781462
(+)
glycine
3781633-3782788 (+)
gcvT
Glycine cleavage system T protein (0)
RC1_3656
Operon
DOOR ID:
480555
RC1_3656
(gcvT)
,
RC1_3657
(gcvH)
,
RC1_3658
(gcvPA)
,
RC1_3659
(gcvPB)
,
RC1_3661
View Structure
7
3849852-3850036
(+)
cobalamin
3850082-3850790 (+)
bluB
Cob(II)yrinic acid a;c-diamide reductase; putative
RC1_3717
Single gene
DOOR ID:
2405594
RC1_3717
(bluB)
View Structure
8
4045804-4046000
(+)
cobalamin
4046197-4048087 (+)
RC1_3870
TonB-dependent receptor; putative
RC1_3870
Operon
DOOR ID:
480590
RC1_3870,
RC1_3871,
RC1_3872,
RC1_3873
View Structure
9
4171236-4171366
(+)
TPP
4171430-4173302 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RC1_3970
Single gene
DOOR ID:
2405714
RC1_3970
(thiC)
View Structure
Genome:
Rhodospirillum centenum SW
(
NC_011420.2
);
Phylum:
Alphaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"332573-332783";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"330455-332483";i:10;s:1:"-";i:11;s:4:"nrdD";i:12;s:48:"Anaerobic ribonucleoside-triphosphate reductase ";i:13;s:8:"RC1_0319";i:14;s:11:"Single gene";i:15;s:7:"2404091";i:16;s:14:"RC1_0319(nrdD)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"332896-333110";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"333223-334810";i:10;s:1:"+";i:11;s:4:"cobQ";i:12;s:21:"Cobyric acid synthase";i:13;s:8:"RC1_0321";i:14;s:6:"Operon";i:15;s:6:"479934";i:16;s:44:"RC1_0321(cobQ);RC1_0322(cobD);RC1_0323(cobU)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"717972-718202";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"715745-717737";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:28:"Vitamin B12 transporter BtuB";i:13;s:8:"RC1_0665";i:14;s:6:"Operon";i:15;s:6:"479993";i:16;s:62:"RC1_0661;RC1_0662(fecE);RC1_0663(hmuU);RC1_0664;RC1_0665(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2663000-2663077";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"2663150-2664407";i:10;s:1:"+";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"RC1_2590";i:14;s:11:"Single gene";i:15;s:7:"2405057";i:16;s:14:"RC1_2590(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3179373-3179475";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3178164-3179370";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:24:"Glycine oxidase ThiO (9)";i:13;s:8:"RC1_3102";i:14;s:6:"Operon";i:15;s:6:"480451";i:16;s:44:"RC1_3100(thiG);RC1_3101(thiS);RC1_3102(thiO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3781356-3781462";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3781633-3782788";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:37:"Glycine cleavage system T protein (0)";i:13;s:8:"RC1_3656";i:14;s:6:"Operon";i:15;s:6:"480555";i:16;s:70:"RC1_3656(gcvT);RC1_3657(gcvH);RC1_3658(gcvPA);RC1_3659(gcvPB);RC1_3661";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3849852-3850036";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3850082-3850790";i:10;s:1:"+";i:11;s:4:"bluB";i:12;s:51:"Cob(II)yrinic acid a;c-diamide reductase; putative ";i:13;s:8:"RC1_3717";i:14;s:11:"Single gene";i:15;s:7:"2405594";i:16;s:14:"RC1_3717(bluB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4045804-4046000";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4046197-4048087";i:10;s:1:"+";i:11;s:8:"RC1_3870";i:12;s:33:"TonB-dependent receptor; putative";i:13;s:8:"RC1_3870";i:14;s:6:"Operon";i:15;s:6:"480590";i:16;s:35:"RC1_3870;RC1_3871;RC1_3872;RC1_3873";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011420.2";i:2;s:27:"Rhodospirillum centenum SW ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4171236-4171366";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4171430-4173302";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"RC1_3970";i:14;s:11:"Single gene";i:15;s:7:"2405714";i:16;s:14:"RC1_3970(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
