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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
180597-180675
(-)
sam-alpha
179369-180554 (-)
Rleg2_0180
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Rleg2_0180
Single gene
DOOR ID:
2397550
Rleg2_0180
View Structure
2
1267723-1267875
(+)
FMN
1267970-1268870 (+)
Rleg2_1251
Rleg2_1251
Single gene
DOOR ID:
2398104
Rleg2_1251
View Structure
3
1932503-1932589
(+)
glycine
1932750-1933887 (+)
gcvT
Glycine cleavage system T protein
Rleg2_1889
Operon
DOOR ID:
477100
Rleg2_1889
(gcvT)
,
Rleg2_1890,
Rleg2_1891
View Structure
4
1932593-1932673
(+)
glycine
1932750-1933887 (+)
gcvT
Glycine cleavage system T protein
Rleg2_1889
Operon
DOOR ID:
477100
Rleg2_1889
(gcvT)
,
Rleg2_1890,
Rleg2_1891
View Structure
5
2053844-2054030
(-)
cobalamin
2053112-2053778 (-)
Rleg2_1996
Cob(II)yrinic acid a;c-diamide reductase
Rleg2_1996
Single gene
DOOR ID:
2398456
Rleg2_1996
View Structure
6
2193546-2193942
(-)
cobalamin
2192692-2193217 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Rleg2_2133
Operon
DOOR ID:
477145
Rleg2_2130,
Rleg2_2131
(cobN)
,
Rleg2_2132,
Rleg2_2133
(cobU)
View Structure
7
2332662-2332917
(-)
cobalamin
2331472-2332489 (-)
Rleg2_2275
Periplasmic binding protein
Rleg2_2275
Operon
DOOR ID:
477161
Rleg2_2273,
Rleg2_2274,
Rleg2_2275
View Structure
8
2423278-2423422
(+)
FMN
2423500-2423935 (+)
Rleg2_2363
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Rleg2_2363
Single gene
DOOR ID:
2398672
Rleg2_2363
View Structure
9
3259113-3259188
(-)
cobalamin
3258852-3259062 (-)
Rleg2_3174
Rleg2_3174
Operon
DOOR ID:
477321
Rleg2_3172,
Rleg2_3173,
Rleg2_3174
View Structure
10
3618315-3618541
(-)
cobalamin
3617833-3618055 (-)
Rleg2_3500
Glutaredoxin-like protein NrdH
Rleg2_3500
Operon
DOOR ID:
477379
Rleg2_3497
(nrdF)
,
Rleg2_3498,
Rleg2_3499
(nrdI)
,
Rleg2_3500
View Structure
11
3773899-3774012
(+)
TPP
3774130-3774937 (+)
Rleg2_3645
Binding-protein-dependent transport systems inner membrane component
Rleg2_3645
Operon
DOOR ID:
477410
Rleg2_3645,
Rleg2_3646,
Rleg2_3647
View Structure
12
3937334-3937411
(-)
sam-alpha
3936360-3937284 (-)
Rleg2_3805
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Rleg2_3805
Operon
DOOR ID:
477441
Rleg2_3804,
Rleg2_3805
View Structure
Genome:
Rhizobium leguminosarum bv. trifolii WSM2304
(
NC_011369.1
);
Phylum:
Alphaproteobacteria
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biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1267723-1267875";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1267970-1268870";i:10;s:1:"+";i:11;s:10:"Rleg2_1251";i:12;s:0:"";i:13;s:10:"Rleg2_1251";i:14;s:11:"Single gene";i:15;s:7:"2398104";i:16;s:10:"Rleg2_1251";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1932503-1932589";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1932750-1933887";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Rleg2_1889";i:14;s:6:"Operon";i:15;s:6:"477100";i:16;s:38:"Rleg2_1889(gcvT);Rleg2_1890;Rleg2_1891";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1932593-1932673";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1932750-1933887";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Rleg2_1889";i:14;s:6:"Operon";i:15;s:6:"477100";i:16;s:38:"Rleg2_1889(gcvT);Rleg2_1890;Rleg2_1891";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2053844-2054030";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2053112-2053778";i:10;s:1:"-";i:11;s:10:"Rleg2_1996";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:10:"Rleg2_1996";i:14;s:11:"Single gene";i:15;s:7:"2398456";i:16;s:10:"Rleg2_1996";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2193546-2193942";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2192692-2193217";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:10:"Rleg2_2133";i:14;s:6:"Operon";i:15;s:6:"477145";i:16;s:55:"Rleg2_2130;Rleg2_2131(cobN);Rleg2_2132;Rleg2_2133(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2332662-2332917";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2331472-2332489";i:10;s:1:"-";i:11;s:10:"Rleg2_2275";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Rleg2_2275";i:14;s:6:"Operon";i:15;s:6:"477161";i:16;s:32:"Rleg2_2273;Rleg2_2274;Rleg2_2275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2423278-2423422";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2423500-2423935";i:10;s:1:"+";i:11;s:10:"Rleg2_2363";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"Rleg2_2363";i:14;s:11:"Single gene";i:15;s:7:"2398672";i:16;s:10:"Rleg2_2363";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3259113-3259188";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3258852-3259062";i:10;s:1:"-";i:11;s:10:"Rleg2_3174";i:12;s:0:"";i:13;s:10:"Rleg2_3174";i:14;s:6:"Operon";i:15;s:6:"477321";i:16;s:32:"Rleg2_3172;Rleg2_3173;Rleg2_3174";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3618315-3618541";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3617833-3618055";i:10;s:1:"-";i:11;s:10:"Rleg2_3500";i:12;s:30:"Glutaredoxin-like protein NrdH";i:13;s:10:"Rleg2_3500";i:14;s:6:"Operon";i:15;s:6:"477379";i:16;s:55:"Rleg2_3497(nrdF);Rleg2_3498;Rleg2_3499(nrdI);Rleg2_3500";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3773899-3774012";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3774130-3774937";i:10;s:1:"+";i:11;s:10:"Rleg2_3645";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:10:"Rleg2_3645";i:14;s:6:"Operon";i:15;s:6:"477410";i:16;s:32:"Rleg2_3645;Rleg2_3646;Rleg2_3647";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011369.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM2304 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3937334-3937411";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3936360-3937284";i:10;s:1:"-";i:11;s:10:"Rleg2_3805";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Rleg2_3805";i:14;s:6:"Operon";i:15;s:6:"477441";i:16;s:21:"Rleg2_3804;Rleg2_3805";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}}