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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
590064-590151
(-)
glycine
588749-589883 (-)
Gdia_0534
Glycine cleavage system T protein
Gdia_0534
Operon
DOOR ID:
475867
Gdia_0532,
Gdia_0533,
Gdia_0534
View Structure
2
921670-921872
(-)
cobalamin
919205-921563 (-)
Gdia_0807
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Gdia_0807
Operon
DOOR ID:
475924
Gdia_0806,
Gdia_0807
View Structure
3
1375889-1375969
(+)
sam-alpha
1376092-1377295 (+)
Gdia_1236
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Gdia_1236
Operon
DOOR ID:
476004
Gdia_1236,
Gdia_1237
(apaG)
,
Gdia_1238
View Structure
4
1496168-1496386
(+)
cobalamin
1496505-1498650 (+)
Gdia_1339
TonB-dependent receptor
Gdia_1339
Operon
DOOR ID:
476026
Gdia_1339,
Gdia_1340,
Gdia_1341,
Gdia_1342,
Gdia_1343
View Structure
5
1550144-1550252
(-)
TPP
1548195-1550076 (-)
Gdia_1390
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Gdia_1390
Single gene
DOOR ID:
2396114
Gdia_1390
View Structure
6
2081883-2082052
(-)
FMN
2080633-2081734 (-)
Gdia_1867
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Gdia_1867
Operon
DOOR ID:
476127
Gdia_1864,
Gdia_1865,
Gdia_1866,
Gdia_1867
View Structure
7
2909147-2909225
(-)
fluoride
2907736-2909110 (-)
Gdia_2639
Chloride channel core
Gdia_2639
Single gene
DOOR ID:
2396584
Gdia_2639
View Structure
8
2915931-2915994
(-)
fluoride
2914290-2915865 (-)
Gdia_2646
DNA mismatch repair protein MutS domain protein
Gdia_2646
Operon
DOOR ID:
476274
Gdia_2645,
Gdia_2646
View Structure
Genome:
Gluconacetobacter diazotrophicus PAl 5
(
NC_011365.1
);
Phylum:
Alphaproteobacteria
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