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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80311-80410
(-)
TPP
79296-80280 (-)
tbpA
ECH74115_0073
Operon
DOOR ID:
474719
ECH74115_0071
(thiQ)
,
ECH74115_0072
(thiP)
,
ECH74115_0073
(tbpA)
View Structure
2
942642-942786
(+)
MOCO
943784-944297 (+)
moaB
ECH74115_0930
Operon
DOOR ID:
474879
ECH74115_0929
(moaA)
,
ECH74115_0930
(moaB)
,
ECH74115_0931
(moaC)
,
ECH74115_0932
(moaD)
,
ECH74115_0933
(moaE)
View Structure
3
2413579-2413680
(+)
yybP-ykoY
2413692-2413815 (+)
ECH74115_2551
ECH74115_2551
Operon
DOOR ID:
475141
ECH74115_2551,
ECH74115_2553
View Structure
4
2855663-2855759
(-)
TPP
2854839-2855628 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECH74115_3083
Operon
DOOR ID:
475243
ECH74115_3079,
ECH74115_3081,
ECH74115_3082
(thiD)
,
ECH74115_3083
(thiM)
View Structure
5
4033747-4033895
(-)
FMN
4032989-4033643 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECH74115_4355
Single gene
DOOR ID:
2394099
ECH74115_4355
(ribB)
View Structure
6
5075762-5075952
(+)
cobalamin
5076016-5077861 (+)
btuB
ECH74115_5430
Operon
DOOR ID:
475673
ECH74115_5430
(btuB)
,
ECH74115_5431
(murI)
View Structure
7
5108118-5108218
(-)
TPP
5106141-5108037 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECH74115_5462
Operon
DOOR ID:
475678
ECH74115_5457
(thiH)
,
ECH74115_5458
(thiG)
,
ECH74115_5459
(thiS)
,
ECH74115_5460
(thiF)
,
ECH74115_5461
(thiE)
,
ECH74115_5462
(thiC)
View Structure
8
5150939-5151135
(-)
lysine
5149497-5150847 (-)
lysC
ECH74115_5502
Single gene
DOOR ID:
2395150
ECH74115_5502
(lysC)
View Structure
9
5306292-5306338
(+)
mini-ykkC
5306355-5306673 (+)
sugE
ECH74115_5667
Single gene
DOOR ID:
2394003
ECH74115_5667
(sugE)
View Structure
10
5398137-5398252
(+)
Mg sensor
5398345-5401042 (+)
mgtA
ECH74115_5764
Single gene
DOOR ID:
2394361
ECH74115_5764
(mgtA)
View Structure
Genome:
Escherichia coli O157:H7 str. EC4115
(
NC_011353.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"80311-80410";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"79296-80280";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:13:"ECH74115_0073";i:14;s:6:"Operon";i:15;s:6:"474719";i:16;s:59:"ECH74115_0071(thiQ);ECH74115_0072(thiP);ECH74115_0073(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"942642-942786";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"943784-944297";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:13:"ECH74115_0930";i:14;s:6:"Operon";i:15;s:6:"474879";i:16;s:99:"ECH74115_0929(moaA);ECH74115_0930(moaB);ECH74115_0931(moaC);ECH74115_0932(moaD);ECH74115_0933(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2413579-2413680";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2413692-2413815";i:10;s:1:"+";i:11;s:13:"ECH74115_2551";i:12;s:0:"";i:13;s:13:"ECH74115_2551";i:14;s:6:"Operon";i:15;s:6:"475141";i:16;s:27:"ECH74115_2551;ECH74115_2553";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2855663-2855759";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2854839-2855628";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:13:"ECH74115_3083";i:14;s:6:"Operon";i:15;s:6:"475243";i:16;s:67:"ECH74115_3079;ECH74115_3081;ECH74115_3082(thiD);ECH74115_3083(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4033747-4033895";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4032989-4033643";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"ECH74115_4355";i:14;s:11:"Single gene";i:15;s:7:"2394099";i:16;s:19:"ECH74115_4355(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5075762-5075952";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5076016-5077861";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:13:"ECH74115_5430";i:14;s:6:"Operon";i:15;s:6:"475673";i:16;s:39:"ECH74115_5430(btuB);ECH74115_5431(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5108118-5108218";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5106141-5108037";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"ECH74115_5462";i:14;s:6:"Operon";i:15;s:6:"475678";i:16;s:119:"ECH74115_5457(thiH);ECH74115_5458(thiG);ECH74115_5459(thiS);ECH74115_5460(thiF);ECH74115_5461(thiE);ECH74115_5462(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5150939-5151135";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"5149497-5150847";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:13:"ECH74115_5502";i:14;s:11:"Single gene";i:15;s:7:"2395150";i:16;s:19:"ECH74115_5502(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5306292-5306338";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5306355-5306673";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:13:"ECH74115_5667";i:14;s:11:"Single gene";i:15;s:7:"2394003";i:16;s:19:"ECH74115_5667(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011353.1";i:2;s:37:"Escherichia coli O157:H7 str. EC4115 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5398137-5398252";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5398345-5401042";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:13:"ECH74115_5764";i:14;s:11:"Single gene";i:15;s:7:"2394361";i:16;s:19:"ECH74115_5764(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}