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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
380531-380644
(+)
TPP
380695-381712 (+)
tbpA
Thiamine-binding periplasmic protein
VSAL_I0349
Operon
DOOR ID:
473673
VSAL_I0349
(tbpA)
,
VSAL_I0350
(thiP)
,
VSAL_I0351
(thiQ)
View Structure
2
1917535-1917640
(+)
glycine
1917736-1919119 (+)
VSAL_I1796
Sodium/alanine symporter
VSAL_I1796
Single gene
DOOR ID:
2392057
VSAL_I1796
View Structure
3
2012938-2013084
(+)
MOCO
2014074-2014554 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
VSAL_I1878
Operon
DOOR ID:
473937
VSAL_I1877
(moaA)
,
VSAL_I1878
(moaC)
,
VSAL_I1879
(moaD)
,
VSAL_I1880
(moaE)
View Structure
4
2124416-2124498
(-)
c-di-GMP-I
2123699-2124287 (-)
tfoX
Putative DNA transformation protein TfoX
VSAL_I1982
single gene
DOOR ID:
2392142
VSAL_I1982
(tfoX)
View Structure
5
2302433-2302616
(-)
lysine
2300761-2302348 (-)
VSAL_I2144
Putative sodium/proton antiporter
VSAL_I2144
Single gene
DOOR ID:
2392211
VSAL_I2144
View Structure
6
3132288-3132518
(-)
cobalamin
3130385-3132242 (-)
VSAL_I2886
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VSAL_I2886
Operon
DOOR ID:
474125
VSAL_I2884
(murI)
,
VSAL_I2885,
VSAL_I2886
View Structure
7
3230504-3230617
(+)
TPP
3230775-3232722 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VSAL_I2983
Operon
DOOR ID:
474143
VSAL_I2983
(thiC)
,
VSAL_I2984
(thiE)
,
VSAL_I2985
(thiF)
,
VSAL_I2986
(thiS)
,
VSAL_I2987
(thiG)
,
VSAL_I2988
(thiH)
View Structure
Genome:
Aliivibrio salmonicida LFI1238 chromosome I
(
NC_011312.1
);
Phylum:
Gammaproteobacteria
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