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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
428191-428296
(+)
TPP
428346-428544 (+)
thiS
Thiamine biosynthesis protein ThiS
THEYE_A0442
Operon
DOOR ID:
472916
THEYE_A0442
(thiS)
,
THEYE_A0443
(thiG)
,
THEYE_A0444
(thiE2)
,
THEYE_A0445
(thiC)
View Structure
2
488876-489083
(+)
cobalamin
489112-491350 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
THEYE_A0504
Operon
DOOR ID:
472925
THEYE_A0504
(metE)
,
THEYE_A0505
(nrdD)
,
THEYE_A0507,
THEYE_A0509
View Structure
3
1157643-1157888
(-)
cobalamin
1155650-1157615 (-)
THEYE_A1182
TonB-dependent receptor-related protein
THEYE_A1182
Operon
DOOR ID:
473064
THEYE_A1181,
THEYE_A1182
View Structure
4
1737215-1737284
(+)
fluoride
1737316-1738477 (+)
THEYE_A1811
Kef-type K+ transport system; membrane component
THEYE_A1811
Operon
DOOR ID:
473185
THEYE_A1811,
THEYE_A1812
View Structure
Genome:
Thermodesulfovibrio yellowstonii DSM 11347
(
NC_011296.1
);
Phylum:
Nitrospira
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