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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126069-126168
(-)
TPP
125053-125920 (-)
tbpA
SEN0109
Operon
DOOR ID:
471735
SEN0107
(thiQ)
,
SEN0108
(thiP)
,
SEN0109
(tbpA)
View Structure
2
829612-829756
(+)
MOCO
830754-831267 (+)
moaB
SEN0749
Operon
DOOR ID:
471866
SEN0748
(moaA)
,
SEN0749
(moaB)
,
SEN0750
(moaC)
,
SEN0751
(moaD)
,
SEN0752
(moaE)
,
SEN0753
(ybhL)
View Structure
3
1283747-1283848
(-)
yybP-ykoY
1283068-1283689 (-)
yebN
SEN1203
Single gene
DOOR ID:
2389140
SEN1203
(yebN)
View Structure
4
2117308-2117483
(-)
cobalamin
2115831-2117211 (-)
cbiA
SEN2033
Operon
DOOR ID:
472079
SEN2013
(erfK)
,
SEN2014
(cobT)
,
SEN2015
(cobS)
,
SEN2016
(cobU)
,
SEN2017
(cbiP)
,
SEN2018
(cbiO)
,
SEN2019
(cboQ)
,
SEN2020
(cbiN)
,
SEN2021
(cbiM)
,
SEN2022
(cbiL)
,
SEN2023
(cbiK)
,
SEN2024
(cbiJ)
,
SEN2025
(cbiH)
,
SEN2026
(cbiG)
,
SEN2027
(cbiF)
,
SEN2028
(cbiT)
,
SEN2029
(cbiE)
,
SEN2030
(cbiD)
,
SEN2031
(cbiC)
,
SEN2032
(cbiB)
,
SEN2033
(cbiA)
View Structure
5
2245590-2245686
(-)
TPP
2244760-2245558 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SEN2143
Operon
DOOR ID:
472094
SEN2141
(yegW)
,
SEN2142
(thiD)
,
SEN2143
(thiM)
View Structure
6
3246568-3246766
(-)
FMN
3245808-3246462 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SEN3037
Single gene
DOOR ID:
2389862
SEN3037
(ribB)
View Structure
7
4220146-4220339
(+)
cobalamin
4220404-4222249 (+)
btuB
SEN3924
Operon
DOOR ID:
472453
SEN3924
(btuB)
,
SEN3925
(murI)
View Structure
8
4254676-4254839
(-)
TPP
4252694-4254590 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SEN3950
Operon
DOOR ID:
472459
SEN3945
(thiH)
,
SEN3946
(thiG)
,
SEN3947,
SEN3948
(thiF)
,
SEN3949
(thiE)
,
SEN3950
(thiC)
View Structure
9
4436728-4436772
(+)
mini-ykkC
4436793-4437111 (+)
sugE
SEN4108
Single gene
DOOR ID:
2390261
SEN4108
(sugE)
View Structure
10
4534575-4534687
(+)
Mg sensor
4534783-4537492 (+)
mgtA
SEN4207
Single gene
DOOR ID:
2390299
SEN4207
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
(
NC_011294.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"126069-126168";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"125053-125920";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:7:"SEN0109";i:14;s:6:"Operon";i:15;s:6:"471735";i:16;s:41:"SEN0107(thiQ);SEN0108(thiP);SEN0109(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"829612-829756";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"830754-831267";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:7:"SEN0749";i:14;s:6:"Operon";i:15;s:6:"471866";i:16;s:83:"SEN0748(moaA);SEN0749(moaB);SEN0750(moaC);SEN0751(moaD);SEN0752(moaE);SEN0753(ybhL)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1283747-1283848";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1283068-1283689";i:10;s:1:"-";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:7:"SEN1203";i:14;s:11:"Single gene";i:15;s:7:"2389140";i:16;s:13:"SEN1203(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2117308-2117483";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2115831-2117211";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:0:"";i:13;s:7:"SEN2033";i:14;s:6:"Operon";i:15;s:6:"472079";i:16;s:293:"SEN2013(erfK);SEN2014(cobT);SEN2015(cobS);SEN2016(cobU);SEN2017(cbiP);SEN2018(cbiO);SEN2019(cboQ);SEN2020(cbiN);SEN2021(cbiM);SEN2022(cbiL);SEN2023(cbiK);SEN2024(cbiJ);SEN2025(cbiH);SEN2026(cbiG);SEN2027(cbiF);SEN2028(cbiT);SEN2029(cbiE);SEN2030(cbiD);SEN2031(cbiC);SEN2032(cbiB);SEN2033(cbiA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2245590-2245686";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2244760-2245558";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:7:"SEN2143";i:14;s:6:"Operon";i:15;s:6:"472094";i:16;s:41:"SEN2141(yegW);SEN2142(thiD);SEN2143(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3246568-3246766";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3245808-3246462";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"SEN3037";i:14;s:11:"Single gene";i:15;s:7:"2389862";i:16;s:13:"SEN3037(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4220146-4220339";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4220404-4222249";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:7:"SEN3924";i:14;s:6:"Operon";i:15;s:6:"472453";i:16;s:27:"SEN3924(btuB);SEN3925(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4254676-4254839";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4252694-4254590";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"SEN3950";i:14;s:6:"Operon";i:15;s:6:"472459";i:16;s:77:"SEN3945(thiH);SEN3946(thiG);SEN3947;SEN3948(thiF);SEN3949(thiE);SEN3950(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4436728-4436772";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4436793-4437111";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"SEN4108";i:14;s:11:"Single gene";i:15;s:7:"2390261";i:16;s:13:"SEN4108(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011294.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4534575-4534687";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4534783-4537492";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:7:"SEN4207";i:14;s:11:"Single gene";i:15;s:7:"2390299";i:16;s:13:"SEN4207(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}