About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
285350-285531
(-)
ykoK
284279-285293 (-)
KPK_0257
Divalent cation transporter; MgtE family
KPK_0257
Single gene
DOOR ID:
2386967
KPK_0257
View Structure
2
679844-679995
(+)
FMN
680100-680754 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
KPK_0668
Single gene
DOOR ID:
2386714
KPK_0668
(ribB)
View Structure
3
926330-926508
(+)
cobalamin
926600-927977 (+)
cobB
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
KPK_0916
Operon
DOOR ID:
470850
KPK_0916
(cobB)
,
KPK_0917
(cobD)
,
KPK_0918
(cbiC)
,
KPK_0919
(cbiD)
,
KPK_0920
(cbiE)
,
KPK_0921
(cbiT)
,
KPK_0922
(cobM)
,
KPK_0923
(cbiG)
,
KPK_0924
(cobJ)
,
KPK_0925
(cobK)
,
KPK_0926
(cbiK)
,
KPK_0927
(cobI)
,
KPK_0928
(cbiM)
,
KPK_0929
(cbiN)
,
KPK_0930
(cbiQ)
,
KPK_0931
(cbiO)
,
KPK_0932
(cobQ)
,
KPK_0933
(cobU)
,
KPK_0934
(cobT)
View Structure
4
1650667-1650764
(+)
TPP
1650798-1651572 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
KPK_1618
Operon
DOOR ID:
470991
KPK_1618
(thiM)
,
KPK_1619
(thiD)
View Structure
5
2016272-2016374
(-)
yybP-ykoY
2015587-2016154 (-)
KPK_1956
Putative manganese efflux pump MntP
KPK_1956
Single gene
DOOR ID:
2387716
KPK_1956
View Structure
6
2593714-2593793
(+)
ZMP-ZTP
2593810-2594443 (+)
KPK_2537
Translocator protein; LysE family
KPK_2537
Single gene
DOOR ID:
2387806
KPK_2537
View Structure
7
2616626-2616727
(-)
TPP
2615861-2616557 (-)
KPK_2557
Aminopyrimidine aminohydrolase
KPK_2557
Operon
DOOR ID:
471154
KPK_2554,
KPK_2555,
KPK_2556,
KPK_2557,
KPK_2558
View Structure
8
2679674-2679772
(+)
ykkC-yxkD
2679828-2680887 (+)
KPK_2621
ABC transporter; periplasmic substrate-binding protein
KPK_2621
Operon
DOOR ID:
471164
KPK_2621,
KPK_2622,
KPK_2623,
KPK_2624,
KPK_2625
View Structure
9
2683979-2684026
(+)
mini-ykkC
2684045-2687651 (+)
uca
KPK_2626
Operon
DOOR ID:
471165
KPK_2626
(uca)
,
KPK_2627
(atzF)
View Structure
10
3635736-3635790
(+)
fluoride
3636328-3640777 (-)
mukB
Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)
KPK_3608
Operon
DOOR ID:
471331
KPK_3608
(mukB)
,
KPK_3609
(mukE)
,
KPK_3610
(mukF)
,
KPK_3611
(smtA)
View Structure
11
3808554-3808692
(-)
MOCO
3807040-3807553 (-)
moaB
Molybdenum cofactor biosynthesis protein B
KPK_3761
Operon
DOOR ID:
471363
KPK_3757,
KPK_3758
(moaE)
,
KPK_3759
(moaD)
,
KPK_3760
(moaC)
,
KPK_3761
(moaB)
,
KPK_3762
(moaA)
View Structure
12
4716836-4716965
(+)
TPP
4716998-4717982 (+)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
KPK_4675
Operon
DOOR ID:
471536
KPK_4675
(tbpA)
,
KPK_4676
(thiP)
,
KPK_4678
(thiQ)
View Structure
13
5065385-5065500
(-)
Mg sensor
5062577-5065286 (-)
mgtA
Magnesium-translocating P-type ATPase
KPK_5014
Single gene
DOOR ID:
2388336
KPK_5014
(mgtA)
View Structure
14
5172423-5172467
(-)
mini-ykkC
5172091-5172409 (-)
sugE
KPK_5119
Single gene
DOOR ID:
2387776
KPK_5119
(sugE)
View Structure
15
5316321-5316556
(+)
lysine
5316735-5318085 (+)
lysC
Aspartokinase
KPK_5260
Single gene
DOOR ID:
2388650
KPK_5260
(lysC)
View Structure
16
5358563-5358687
(+)
TPP
5358773-5360669 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
KPK_5298
Operon
DOOR ID:
471659
KPK_5298
(thiC)
,
KPK_5299
(thiE)
,
KPK_5300
(thiF)
,
KPK_5301
(thiS)
,
KPK_5302
(thiG)
,
KPK_5303
(thiH)
View Structure
17
5493171-5493358
(-)
cobalamin
5491249-5493106 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
KPK_5426
Operon
DOOR ID:
471682
KPK_5425
(murI)
,
KPK_5426
(btuB)
View Structure
Genome:
Klebsiella pneumoniae 342
(
NC_011283.1
);
Phylum:
Gammaproteobacteria
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"285350-285531";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"284279-285293";i:10;s:1:"-";i:11;s:8:"KPK_0257";i:12;s:40:"Divalent cation transporter; MgtE family";i:13;s:8:"KPK_0257";i:14;s:11:"Single gene";i:15;s:7:"2386967";i:16;s:8:"KPK_0257";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"679844-679995";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"680100-680754";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"KPK_0668";i:14;s:11:"Single gene";i:15;s:7:"2386714";i:16;s:14:"KPK_0668(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"926330-926508";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"926600-927977";i:10;s:1:"+";i:11;s:4:"cobB";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:8:"KPK_0916";i:14;s:6:"Operon";i:15;s:6:"470850";i:16;s:284:"KPK_0916(cobB);KPK_0917(cobD);KPK_0918(cbiC);KPK_0919(cbiD);KPK_0920(cbiE);KPK_0921(cbiT);KPK_0922(cobM);KPK_0923(cbiG);KPK_0924(cobJ);KPK_0925(cobK);KPK_0926(cbiK);KPK_0927(cobI);KPK_0928(cbiM);KPK_0929(cbiN);KPK_0930(cbiQ);KPK_0931(cbiO);KPK_0932(cobQ);KPK_0933(cobU);KPK_0934(cobT)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1650667-1650764";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1650798-1651572";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"KPK_1618";i:14;s:6:"Operon";i:15;s:6:"470991";i:16;s:29:"KPK_1618(thiM);KPK_1619(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2016272-2016374";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2015587-2016154";i:10;s:1:"-";i:11;s:8:"KPK_1956";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"KPK_1956";i:14;s:11:"Single gene";i:15;s:7:"2387716";i:16;s:8:"KPK_1956";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2593714-2593793";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2593810-2594443";i:10;s:1:"+";i:11;s:8:"KPK_2537";i:12;s:33:"Translocator protein; LysE family";i:13;s:8:"KPK_2537";i:14;s:11:"Single gene";i:15;s:7:"2387806";i:16;s:8:"KPK_2537";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2616626-2616727";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2615861-2616557";i:10;s:1:"-";i:11;s:8:"KPK_2557";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"KPK_2557";i:14;s:6:"Operon";i:15;s:6:"471154";i:16;s:44:"KPK_2554;KPK_2555;KPK_2556;KPK_2557;KPK_2558";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2679674-2679772";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2679828-2680887";i:10;s:1:"+";i:11;s:8:"KPK_2621";i:12;s:54:"ABC transporter; periplasmic substrate-binding protein";i:13;s:8:"KPK_2621";i:14;s:6:"Operon";i:15;s:6:"471164";i:16;s:44:"KPK_2621;KPK_2622;KPK_2623;KPK_2624;KPK_2625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2683979-2684026";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2684045-2687651";i:10;s:1:"+";i:11;s:3:"uca";i:12;s:0:"";i:13;s:8:"KPK_2626";i:14;s:6:"Operon";i:15;s:6:"471165";i:16;s:28:"KPK_2626(uca);KPK_2627(atzF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3635736-3635790";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3636328-3640777";i:10;s:1:"-";i:11;s:4:"mukB";i:12;s:88:"Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)";i:13;s:8:"KPK_3608";i:14;s:6:"Operon";i:15;s:6:"471331";i:16;s:59:"KPK_3608(mukB);KPK_3609(mukE);KPK_3610(mukF);KPK_3611(smtA)";i:17;s:126:"cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome condensation [GO:0030261]; chromosome segregation [GO:0007059]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3808554-3808692";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3807040-3807553";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:8:"KPK_3761";i:14;s:6:"Operon";i:15;s:6:"471363";i:16;s:83:"KPK_3757;KPK_3758(moaE);KPK_3759(moaD);KPK_3760(moaC);KPK_3761(moaB);KPK_3762(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4716836-4716965";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4716998-4717982";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:8:"KPK_4675";i:14;s:6:"Operon";i:15;s:6:"471536";i:16;s:44:"KPK_4675(tbpA);KPK_4676(thiP);KPK_4678(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5065385-5065500";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5062577-5065286";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:8:"KPK_5014";i:14;s:11:"Single gene";i:15;s:7:"2388336";i:16;s:14:"KPK_5014(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5172423-5172467";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5172091-5172409";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"KPK_5119";i:14;s:11:"Single gene";i:15;s:7:"2387776";i:16;s:14:"KPK_5119(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5316321-5316556";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"5316735-5318085";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"KPK_5260";i:14;s:11:"Single gene";i:15;s:7:"2388650";i:16;s:14:"KPK_5260(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5358563-5358687";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5358773-5360669";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"KPK_5298";i:14;s:6:"Operon";i:15;s:6:"471659";i:16;s:89:"KPK_5298(thiC);KPK_5299(thiE);KPK_5300(thiF);KPK_5301(thiS);KPK_5302(thiG);KPK_5303(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_011283.1";i:2;s:26:"Klebsiella pneumoniae 342 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5493171-5493358";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5491249-5493106";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"KPK_5426";i:14;s:6:"Operon";i:15;s:6:"471682";i:16;s:29:"KPK_5425(murI);KPK_5426(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}