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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126209-126308
(-)
TPP
125193-126060 (-)
tbpA
Thiamine-binding periplasmic protein
SG0109
Operon
DOOR ID:
469858
SG0107
(thiQ)
,
SG0108
(thiP)
,
SG0109
(tbpA)
View Structure
2
847519-847663
(+)
MOCO
848661-849174 (+)
moaB
Molybdenum cofactor biosynthesis protein B
SG0782
Operon
DOOR ID:
469982
SG0781
(moaA)
,
SG0782
(moaB)
,
SG0783
(moaC)
,
SG0784
(moaD)
,
SG0785
(moaE)
,
SG0786
(ybhL)
View Structure
3
1347812-1347913
(-)
yybP-ykoY
1347133-1347754 (-)
yebN
Probable manganese efflux pump MntP
SG1283
Operon
DOOR ID:
2385115
SG1283
(yebN)
View Structure
4
2108427-2108602
(-)
cobalamin
2106950-2108330 (-)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
SG2061
Operon
DOOR ID:
470169
SG2060
(cbiB)
,
SG2061
(cbiA)
View Structure
5
2236592-2236688
(-)
TPP
2235762-2236560 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SG2180
Operon
DOOR ID:
470186
SG2178
(yegW)
,
SG2179
(thiD)
,
SG2180
(thiM)
View Structure
6
3223946-3224144
(-)
FMN
3223186-3223840 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SG3091
Single gene
DOOR ID:
2385801
SG3091
(ribB)
View Structure
7
3434294-3434487
(-)
cobalamin
3432383-3434228 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SG3286
Operon
DOOR ID:
470391
SG3285
(murI)
,
SG3286
(btuB)
View Structure
8
3602499-3602662
(+)
TPP
3602747-3604643 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SG3442
Operon
DOOR ID:
470424
SG3442
(thiC)
,
SG3443
(thiE)
,
SG3444
(thiF)
,
SG3445,
SG3446
(thiG)
,
SG3447
(thiH)
View Structure
9
4414629-4414673
(+)
mini-ykkC
4414694-4415012 (+)
sugE
SG4181
Single gene
DOOR ID:
2386197
SG4181
(sugE)
View Structure
10
4512470-4512582
(+)
Mg sensor
4512678-4515387 (+)
mgtA
Mg(2+) transport ATPase; P-type
SG4282
Single gene
DOOR ID:
2386237
SG4282
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
(
NC_011274.1
);
Phylum:
Gammaproteobacteria
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glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2236592-2236688";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2235762-2236560";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:6:"SG2180";i:14;s:6:"Operon";i:15;s:6:"470186";i:16;s:38:"SG2178(yegW);SG2179(thiD);SG2180(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3223946-3224144";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3223186-3223840";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:6:"SG3091";i:14;s:11:"Single gene";i:15;s:7:"2385801";i:16;s:12:"SG3091(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3434294-3434487";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3432383-3434228";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:6:"SG3286";i:14;s:6:"Operon";i:15;s:6:"470391";i:16;s:25:"SG3285(murI);SG3286(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3602499-3602662";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3602747-3604643";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:6:"SG3442";i:14;s:6:"Operon";i:15;s:6:"470424";i:16;s:71:"SG3442(thiC);SG3443(thiE);SG3444(thiF);SG3445;SG3446(thiG);SG3447(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4414629-4414673";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4414694-4415012";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:6:"SG4181";i:14;s:11:"Single gene";i:15;s:7:"2386197";i:16;s:12:"SG4181(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011274.1";i:2;s:67:"Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4512470-4512582";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4512678-4515387";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:6:"SG4282";i:14;s:11:"Single gene";i:15;s:7:"2386237";i:16;s:12:"SG4282(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}