About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
644650-644781
(+)
SAH
644800-646207 (+)
Lferr_0691
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Lferr_0691
Operon
DOOR ID:
468984
Lferr_0691,
Lferr_0692
View Structure
2
1038420-1038513
(+)
TPP
1038586-1040470 (+)
Lferr_1064
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Lferr_1064
Single gene
DOOR ID:
2383354
Lferr_1064
View Structure
3
1633267-1633415
(-)
FMN
1632495-1633167 (-)
Lferr_1663
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Lferr_1663
Single gene
DOOR ID:
2383537
Lferr_1663
View Structure
4
2508708-2508771
(+)
fluoride
2508822-2509200 (+)
Lferr_2541
Putative fluoride ion transporter CrcB
Lferr_2541
Operon
DOOR ID:
469357
Lferr_2541,
Lferr_2542
View Structure
Genome:
Acidithiobacillus ferrooxidans ATCC 53993
(
NC_011206.1
);
Phylum:
Acidithiobacillia
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011206.1";i:2;s:42:"Acidithiobacillus ferrooxidans ATCC 53993 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:13:"644650-644781";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"644800-646207";i:10;s:1:"+";i:11;s:10:"Lferr_0691";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Lferr_0691";i:14;s:6:"Operon";i:15;s:6:"468984";i:16;s:21:"Lferr_0691;Lferr_0692";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011206.1";i:2;s:42:"Acidithiobacillus ferrooxidans ATCC 53993 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:15:"1038420-1038513";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1038586-1040470";i:10;s:1:"+";i:11;s:10:"Lferr_1064";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Lferr_1064";i:14;s:11:"Single gene";i:15;s:7:"2383354";i:16;s:10:"Lferr_1064";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011206.1";i:2;s:42:"Acidithiobacillus ferrooxidans ATCC 53993 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:15:"1633267-1633415";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1632495-1633167";i:10;s:1:"-";i:11;s:10:"Lferr_1663";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Lferr_1663";i:14;s:11:"Single gene";i:15;s:7:"2383537";i:16;s:10:"Lferr_1663";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011206.1";i:2;s:42:"Acidithiobacillus ferrooxidans ATCC 53993 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:15:"2508708-2508771";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2508822-2509200";i:10;s:1:"+";i:11;s:10:"Lferr_2541";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Lferr_2541";i:14;s:6:"Operon";i:15;s:6:"469357";i:16;s:21:"Lferr_2541;Lferr_2542";i:17;s:0:"";i:18;s:15:"View Structure ";}}
