Genome: Vibrio fischeri MJ11 chromosome I (NC_011184.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 34842-34908 (+)fluoride35034-36414 (+)VFMJ11_0031

Chloride channel protein
VFMJ11_0031Single gene

DOOR ID: 2379514
VFMJ11_0031 View Structure
2 36713-36825 (+)TPP37013-38948 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 467235
VFMJ11_0033 (thiC),
VFMJ11_0034 (thiE_2),
VFMJ11_0036 (thiS),
VFMJ11_0037 (thiG),
VFMJ11_0038 (thiH)
View Structure
3 259794-259906 (+)TPP259959-260976 (+)tbpA

Thiamin/thiamin pyrophosphate ABC transporter; thiamin/thiamin pyrophospate-binding protein

DOOR ID: 467270
VFMJ11_0255 (tbpA),
VFMJ11_0256 (thiP),
VFMJ11_0257 (thiQ)
View Structure
4 353964-354138 (-)lysine352545-353898 (-)VFMJ11_0329

VFMJ11_0329Single gene

DOOR ID: 2379598
VFMJ11_0329 View Structure
5 1028357-1028505 (+)MOCO1029495-1029975 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)

DOOR ID: 467385
VFMJ11_0981 (moaA),
VFMJ11_0982 (moaC),
VFMJ11_0983 (moaD),
VFMJ11_0984 (moaE)
View Structure
6 1633332-1633437 (+)glycine1633534-1634917 (+)VFMJ11_1550

Sodium/alanine symporter
VFMJ11_1550Single gene

DOOR ID: 2380380
VFMJ11_1550 View Structure
7 1780753-1780835 (+)c-di-GMP-I1780963-1781551 (+)VFMJ11_1676

DNA transformation protein TfoX
VFMJ11_1676single gene

DOOR ID: 2380207
VFMJ11_1676 View Structure
8 1859017-1859200 (-)lysine1857348-1858935 (-)VFMJ11_1750

Na+/H+ antiporter family protein
VFMJ11_1750Single gene

DOOR ID: 2380259
VFMJ11_1750 View Structure
9 2743570-2743795 (-)cobalamin2741676-2743524 (-)VFMJ11_2559

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 467659
VFMJ11_2557 (murI),
View Structure