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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
128277-128376
(-)
TPP
127261-128245 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
SeAg_B0119
Operon
DOOR ID:
466366
SeAg_B0117
(thiQ)
,
SeAg_B0118
(thiP)
,
SeAg_B0119
(tbpA)
,
SeAg_B0121,
SeAg_B0122
(sgrR)
View Structure
2
834165-834309
(+)
MOCO
835307-835820 (+)
moaB
Molybdenum cofactor biosynthesis protein B
SeAg_B0838
Operon
DOOR ID:
466504
SeAg_B0837
(moaA)
,
SeAg_B0838
(moaB)
,
SeAg_B0839
(moaC)
,
SeAg_B0840
(moaD)
,
SeAg_B0841
(moaE)
,
SeAg_B0842
View Structure
3
1268600-1268701
(-)
yybP-ykoY
1267921-1268488 (-)
SeAg_B1297
Probable manganese efflux pump MntP
SeAg_B1297
Single gene
DOOR ID:
2379115
SeAg_B1297
View Structure
4
2071739-2071914
(-)
cobalamin
2070262-2071642 (-)
cobB
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
SeAg_B2157
Operon
DOOR ID:
466720
SeAg_B2137,
SeAg_B2138
(cobT)
,
SeAg_B2139
(cobS)
,
SeAg_B2140
(cobU)
,
SeAg_B2141
(cobQ)
,
SeAg_B2142
(cbiO)
,
SeAg_B2143
(cbiQ)
,
SeAg_B2144,
SeAg_B2145
(cbiM)
,
SeAg_B2146
(cobI)
,
SeAg_B2147,
SeAg_B2148
(cobK)
,
SeAg_B2149
(cobJ)
,
SeAg_B2150,
SeAg_B2151
(cobM)
,
SeAg_B2152,
SeAg_B2153
(cbiE)
,
SeAg_B2154
(cbiD)
,
SeAg_B2155
(cbiC)
,
SeAg_B2156
(cbiB)
,
SeAg_B2157
(cobB)
View Structure
5
2207467-2207563
(-)
TPP
2206637-2207435 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SeAg_B2290
Operon
DOOR ID:
466739
SeAg_B2288,
SeAg_B2289
(thiD)
,
SeAg_B2290
(thiM)
View Structure
6
3281538-3281736
(-)
FMN
3280778-3281432 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SeAg_B3378
Single gene
DOOR ID:
2379284
SeAg_B3378
(ribB)
View Structure
7
4266685-4266878
(+)
cobalamin
4266943-4268788 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SeAg_B4372
Operon
DOOR ID:
467127
SeAg_B4372
(btuB)
,
SeAg_B4373
(murI)
View Structure
8
4300661-4300824
(-)
TPP
4298679-4300575 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SeAg_B4407
Operon
DOOR ID:
467133
SeAg_B4402
(thiH)
,
SeAg_B4403
(thiG)
,
SeAg_B4404
(thiS)
,
SeAg_B4405,
SeAg_B4406
(thiE)
,
SeAg_B4407
(thiC)
View Structure
9
4632183-4632295
(+)
Mg sensor
4632391-4635100 (+)
mgtA
Magnesium-translocating P-type ATPase
SeAg_B4740
Single gene
DOOR ID:
2378669
SeAg_B4740
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Agona str. SL483
(
NC_011149.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"128277-128376";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"127261-128245";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:10:"SeAg_B0119";i:14;s:6:"Operon";i:15;s:6:"466366";i:16;s:78:"SeAg_B0117(thiQ);SeAg_B0118(thiP);SeAg_B0119(tbpA);SeAg_B0121;SeAg_B0122(sgrR)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"834165-834309";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"835307-835820";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"SeAg_B0838";i:14;s:6:"Operon";i:15;s:6:"466504";i:16;s:95:"SeAg_B0837(moaA);SeAg_B0838(moaB);SeAg_B0839(moaC);SeAg_B0840(moaD);SeAg_B0841(moaE);SeAg_B0842";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1268600-1268701";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1267921-1268488";i:10;s:1:"-";i:11;s:10:"SeAg_B1297";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"SeAg_B1297";i:14;s:11:"Single gene";i:15;s:7:"2379115";i:16;s:10:"SeAg_B1297";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2071739-2071914";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2070262-2071642";i:10;s:1:"-";i:11;s:4:"cobB";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"SeAg_B2157";i:14;s:6:"Operon";i:15;s:6:"466720";i:16;s:326:"SeAg_B2137;SeAg_B2138(cobT);SeAg_B2139(cobS);SeAg_B2140(cobU);SeAg_B2141(cobQ);SeAg_B2142(cbiO);SeAg_B2143(cbiQ);SeAg_B2144;SeAg_B2145(cbiM);SeAg_B2146(cobI);SeAg_B2147;SeAg_B2148(cobK);SeAg_B2149(cobJ);SeAg_B2150;SeAg_B2151(cobM);SeAg_B2152;SeAg_B2153(cbiE);SeAg_B2154(cbiD);SeAg_B2155(cbiC);SeAg_B2156(cbiB);SeAg_B2157(cobB)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2207467-2207563";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2206637-2207435";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"SeAg_B2290";i:14;s:6:"Operon";i:15;s:6:"466739";i:16;s:44:"SeAg_B2288;SeAg_B2289(thiD);SeAg_B2290(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3281538-3281736";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3280778-3281432";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"SeAg_B3378";i:14;s:11:"Single gene";i:15;s:7:"2379284";i:16;s:16:"SeAg_B3378(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4266685-4266878";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4266943-4268788";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"SeAg_B4372";i:14;s:6:"Operon";i:15;s:6:"467127";i:16;s:33:"SeAg_B4372(btuB);SeAg_B4373(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4300661-4300824";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4298679-4300575";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"SeAg_B4407";i:14;s:6:"Operon";i:15;s:6:"467133";i:16;s:95:"SeAg_B4402(thiH);SeAg_B4403(thiG);SeAg_B4404(thiS);SeAg_B4405;SeAg_B4406(thiE);SeAg_B4407(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011149.1";i:2;s:61:"Salmonella enterica subsp. enterica serovar Agona str. SL483 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4632183-4632295";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4632391-4635100";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:10:"SeAg_B4740";i:14;s:11:"Single gene";i:15;s:7:"2378669";i:16;s:16:"SeAg_B4740(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}