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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
128246-128345
(-)
TPP
127230-128214 (-)
SSPA0106
SSPA0106
Operon
DOOR ID:
465539
SSPA0104
(thiQ)
,
SSPA0105
(thiP)
,
SSPA0106
View Structure
2
789059-789155
(+)
TPP
789186-789984 (+)
SSPA0664
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SSPA0664
Operon
DOOR ID:
465659
SSPA0664,
SSPA0665,
SSPA0666
View Structure
3
1104117-1104218
(-)
yybP-ykoY
1103438-1104059 (-)
SSPA0969
SSPA0969
Single gene
DOOR ID:
2376184
SSPA0969
View Structure
4
2024633-2024777
(-)
MOCO
2023121-2023634 (-)
SSPA1818
SSPA1818
Operon
DOOR ID:
465860
SSPA1814,
SSPA1815
(moaE)
,
SSPA1816
(moaD)
,
SSPA1817
(moaC)
,
SSPA1818,
SSPA1819
(moaA)
View Structure
5
3164745-3164943
(-)
FMN
3163985-3164639 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SSPA2859
Single gene
DOOR ID:
2376986
SSPA2859
(ribB)
View Structure
6
4117287-4117480
(+)
cobalamin
4117545-4119390 (+)
btuB
SSPA3693
Operon
DOOR ID:
466249
SSPA3693
(btuB)
,
SSPA3694
View Structure
7
4150465-4150628
(-)
TPP
4148483-4150379 (-)
SSPA3716
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SSPA3716
Operon
DOOR ID:
466255
SSPA3711
(thiH)
,
SSPA3712
(thiG)
,
SSPA3713,
SSPA3714,
SSPA3715,
SSPA3716
View Structure
8
4326860-4326904
(+)
mini-ykkC
4326925-4327243 (+)
sugE
SSPA3859
Single gene
DOOR ID:
2377373
SSPA3859
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU 12601
(
NC_011147.1
);
Phylum:
Gammaproteobacteria
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