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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
382539-382615
(+)
c-di-GMP-I
382718-383318 (+)
Gbem_0309
Outer membrane protein; putative
Gbem_0309
single gene
DOOR ID:
2374343
Gbem_0309
View Structure
2
432343-432444
(-)
SAM
431139-432243 (-)
Gbem_0349
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Gbem_0349
Single gene
DOOR ID:
2374358
Gbem_0349
View Structure
3
511594-511763
(-)
ykoK
509467-511204 (-)
Gbem_0431
ABC transporter; membrane protein
Gbem_0431
Single gene
DOOR ID:
2374401
Gbem_0431
View Structure
4
643081-643212
(-)
ydaO-yuaA
641166-642987 (-)
Gbem_0532
Probable potassium transport system protein kup
Gbem_0532
Single gene
DOOR ID:
2374439
Gbem_0532
View Structure
5
649654-649730
(-)
c-di-GMP-I
649362-649566 (-)
Gbem_0537
Uncharacterized protein
Gbem_0537
single gene
DOOR ID:
2374442
Gbem_0537
View Structure
6
1255971-1256047
(-)
c-di-GMP-I
1254244-1255801 (-)
Gbem_1080
Uncharacterized protein
Gbem_1080
single gene
DOOR ID:
2374633
Gbem_1080
View Structure
7
1375451-1375527
(+)
c-di-GMP-I
1375617-1376316 (+)
Gbem_1180
Uncharacterized protein
Gbem_1180
single gene
DOOR ID:
2374670
Gbem_1180
View Structure
8
1559582-1559703
(-)
MOCO
1557820-1559551 (-)
Gbem_1352
Aldehyde:ferredoxin oxidoreductase; tungsten-containing
Gbem_1352
Single gene
DOOR ID:
2374734
Gbem_1352
View Structure
9
2076757-2076832
(+)
c-di-GMP-I
2076905-2079389 (+)
Gbem_1798
Repeat-containing protein
Gbem_1798
single gene
DOOR ID:
2374864
Gbem_1798
View Structure
10
2079950-2080025
(+)
c-di-GMP-I
2080098-2083389 (+)
Gbem_1799
Repeat-containing protein
Gbem_1799
single gene
DOOR ID:
2374865
Gbem_1799
View Structure
11
2178925-2179000
(-)
c-di-GMP-I
2177302-2178835 (-)
Gbem_1881
Lipoprotein cytochrome c
Gbem_1881
single gene
DOOR ID:
2374890
Gbem_1881
View Structure
12
2179112-2179188
(-)
c-di-GMP-I
2177302-2178835 (-)
Gbem_1881
Lipoprotein cytochrome c
Gbem_1881
single gene
DOOR ID:
2374890
Gbem_1881
View Structure
13
2499065-2499141
(-)
c-di-GMP-I
2498310-2498979 (-)
Gbem_2146
Uncharacterized protein
Gbem_2146
single gene
DOOR ID:
2374989
Gbem_2146
View Structure
14
2581068-2581172
(+)
SAM
2581246-2582395 (+)
metC-1
Cystathionine gamma-synthase/beta-lyase
Gbem_2218
Operon
DOOR ID:
465132
Gbem_2218
(metC-1)
,
Gbem_2219
(metC-2)
View Structure
15
2644200-2644320
(+)
MOCO
2644394-2645606 (+)
moeA-3
Molybdopterin--molybdenum ligase
Gbem_2273
Operon
DOOR ID:
465144
Gbem_2273
(moeA-3)
,
Gbem_2274
(moaC-2)
,
Gbem_2275
(moaB)
View Structure
16
2736160-2736237
(-)
c-di-GMP-I
2735741-2736050 (-)
Gbem_2358
Uncharacterized protein
Gbem_2358
single gene
DOOR ID:
2375063
Gbem_2358
View Structure
17
3038785-3038907
(-)
MOCO
3038423-3038612 (-)
Gbem_2621
Ferredoxin; putative
Gbem_2621
Single gene
DOOR ID:
2375139
Gbem_2621
View Structure
18
3039012-3039132
(-)
MOCO
3038423-3038612 (-)
Gbem_2621
Ferredoxin; putative
Gbem_2621
Single gene
DOOR ID:
2375139
Gbem_2621
View Structure
19
3197829-3197905
(+)
c-di-GMP-I
3198005-3198311 (+)
Gbem_2771
Uncharacterized protein
Gbem_2771
operon
DOOR ID:
465246
Gbem_2771,
Gbem_2772,
Gbem_2773
View Structure
20
3434303-3434379
(-)
c-di-GMP-I
3434033-3434228 (-)
Gbem_2966
Lipoprotein; putative
Gbem_2966
single gene
DOOR ID:
2375284
Gbem_2966
View Structure
21
3732441-3732610
(-)
ykoK
3730847-3732098 (-)
Gbem_3240
Cation transporter; CBS domain pair-containing; putative
Gbem_3240
Single gene
DOOR ID:
2375746
Gbem_3240
View Structure
22
3975084-3975185
(+)
TPP
3975446-3976901 (+)
thiE%2FthiD
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Gbem_3462
Operon
DOOR ID:
465397
Gbem_3462
(thiE/thiD)
,
Gbem_3463
(thiC-1)
View Structure
23
4354928-4355109
(-)
cobalamin
4354314-4354839 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Gbem_3814
Single gene
DOOR ID:
2375579
Gbem_3814
(cobU)
View Structure
24
4525108-4525184
(+)
c-di-GMP-I
4525621-4526944 (+)
Gbem_3988
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
Gbem_3988
single gene
DOOR ID:
2375760
Gbem_3988
View Structure
25
4525294-4525370
(+)
c-di-GMP-I
4525621-4526944 (+)
Gbem_3988
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
Gbem_3988
single gene
DOOR ID:
2375760
Gbem_3988
View Structure
Genome:
Geobacter bemidjiensis Bem
(
NC_011146.1
);
Phylum:
delta/epsilon subdivisions
a:26:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"382539-382615";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"382718-383318";i:10;s:1:"+";i:11;s:9:"Gbem_0309";i:12;s:32:"Outer membrane protein; putative";i:13;s:9:"Gbem_0309";i:14;s:11:"single gene";i:15;s:7:"2374343";i:16;s:9:"Gbem_0309";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"432343-432444";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"431139-432243";i:10;s:1:"-";i:11;s:9:"Gbem_0349";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Gbem_0349";i:14;s:11:"Single gene";i:15;s:7:"2374358";i:16;s:9:"Gbem_0349";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"511594-511763";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"509467-511204";i:10;s:1:"-";i:11;s:9:"Gbem_0431";i:12;s:33:"ABC transporter; membrane protein";i:13;s:9:"Gbem_0431";i:14;s:11:"Single gene";i:15;s:7:"2374401";i:16;s:9:"Gbem_0431";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"643081-643212";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"641166-642987";i:10;s:1:"-";i:11;s:9:"Gbem_0532";i:12;s:47:"Probable potassium transport system protein kup";i:13;s:9:"Gbem_0532";i:14;s:11:"Single gene";i:15;s:7:"2374439";i:16;s:9:"Gbem_0532";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"649654-649730";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"649362-649566";i:10;s:1:"-";i:11;s:9:"Gbem_0537";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_0537";i:14;s:11:"single gene";i:15;s:7:"2374442";i:16;s:9:"Gbem_0537";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1255971-1256047";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1254244-1255801";i:10;s:1:"-";i:11;s:9:"Gbem_1080";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_1080";i:14;s:11:"single gene";i:15;s:7:"2374633";i:16;s:9:"Gbem_1080";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1375451-1375527";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1375617-1376316";i:10;s:1:"+";i:11;s:9:"Gbem_1180";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_1180";i:14;s:11:"single gene";i:15;s:7:"2374670";i:16;s:9:"Gbem_1180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1559582-1559703";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1557820-1559551";i:10;s:1:"-";i:11;s:9:"Gbem_1352";i:12;s:55:"Aldehyde:ferredoxin oxidoreductase; tungsten-containing";i:13;s:9:"Gbem_1352";i:14;s:11:"Single gene";i:15;s:7:"2374734";i:16;s:9:"Gbem_1352";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2076757-2076832";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2076905-2079389";i:10;s:1:"+";i:11;s:9:"Gbem_1798";i:12;s:25:"Repeat-containing protein";i:13;s:9:"Gbem_1798";i:14;s:11:"single gene";i:15;s:7:"2374864";i:16;s:9:"Gbem_1798";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2079950-2080025";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2080098-2083389";i:10;s:1:"+";i:11;s:9:"Gbem_1799";i:12;s:25:"Repeat-containing protein";i:13;s:9:"Gbem_1799";i:14;s:11:"single gene";i:15;s:7:"2374865";i:16;s:9:"Gbem_1799";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2178925-2179000";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2177302-2178835";i:10;s:1:"-";i:11;s:9:"Gbem_1881";i:12;s:24:"Lipoprotein cytochrome c";i:13;s:9:"Gbem_1881";i:14;s:11:"single gene";i:15;s:7:"2374890";i:16;s:9:"Gbem_1881";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2179112-2179188";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2177302-2178835";i:10;s:1:"-";i:11;s:9:"Gbem_1881";i:12;s:24:"Lipoprotein cytochrome c";i:13;s:9:"Gbem_1881";i:14;s:11:"single gene";i:15;s:7:"2374890";i:16;s:9:"Gbem_1881";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2499065-2499141";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2498310-2498979";i:10;s:1:"-";i:11;s:9:"Gbem_2146";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_2146";i:14;s:11:"single gene";i:15;s:7:"2374989";i:16;s:9:"Gbem_2146";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2581068-2581172";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2581246-2582395";i:10;s:1:"+";i:11;s:6:"metC-1";i:12;s:39:"Cystathionine gamma-synthase/beta-lyase";i:13;s:9:"Gbem_2218";i:14;s:6:"Operon";i:15;s:6:"465132";i:16;s:35:"Gbem_2218(metC-1);Gbem_2219(metC-2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2644200-2644320";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2644394-2645606";i:10;s:1:"+";i:11;s:6:"moeA-3";i:12;s:32:"Molybdopterin--molybdenum ligase";i:13;s:9:"Gbem_2273";i:14;s:6:"Operon";i:15;s:6:"465144";i:16;s:51:"Gbem_2273(moeA-3);Gbem_2274(moaC-2);Gbem_2275(moaB)";i:17;s:56:"molybdopterin cofactor biosynthetic process [GO:0032324]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2736160-2736237";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2735741-2736050";i:10;s:1:"-";i:11;s:9:"Gbem_2358";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_2358";i:14;s:11:"single gene";i:15;s:7:"2375063";i:16;s:9:"Gbem_2358";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3038785-3038907";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:6:"Tandem";i:9;s:15:"3038423-3038612";i:10;s:1:"-";i:11;s:9:"Gbem_2621";i:12;s:20:"Ferredoxin; putative";i:13;s:9:"Gbem_2621";i:14;s:11:"Single gene";i:15;s:7:"2375139";i:16;s:9:"Gbem_2621";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3039012-3039132";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:6:"Tandem";i:9;s:15:"3038423-3038612";i:10;s:1:"-";i:11;s:9:"Gbem_2621";i:12;s:20:"Ferredoxin; putative";i:13;s:9:"Gbem_2621";i:14;s:11:"Single gene";i:15;s:7:"2375139";i:16;s:9:"Gbem_2621";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3197829-3197905";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3198005-3198311";i:10;s:1:"+";i:11;s:9:"Gbem_2771";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gbem_2771";i:14;s:6:"operon";i:15;s:6:"465246";i:16;s:29:"Gbem_2771;Gbem_2772;Gbem_2773";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_011146.1";i:2;s:27:"Geobacter bemidjiensis Bem ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3434303-3434379";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3434033-3434228";i:10;s:1:"-";i:11;s:9:"Gbem_2966";i:12;s:21:"Lipoprotein; 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