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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
182696-182766
(-)
SAH
181166-181637 (-)
PHZ_c0187
PHZ_c0187
Single gene
DOOR ID:
2371379
PHZ_c0187
View Structure
2
243125-243172
(+)
mini-ykkC
243194-243521 (+)
PHZ_c0240
PHZ_c0240
Single gene
DOOR ID:
2371396
PHZ_c0240
View Structure
3
627805-627906
(-)
glycine
626493-627636 (-)
gcvT
Glycine cleavage system T protein
PHZ_c0592
Single gene
DOOR ID:
2371515
PHZ_c0592
(gcvT)
View Structure
4
2025984-2026081
(-)
yybP-ykoY
2025323-2025896 (-)
PHZ_c1810
PHZ_c1810
Operon
DOOR ID:
463356
PHZ_c1809,
PHZ_c1810
View Structure
5
2149790-2149993
(-)
cobalamin
2147781-2149704 (-)
PHZ_c1918
TonB-dependent receptor for transport vitamin B12
PHZ_c1918
Operon
DOOR ID:
463380
PHZ_c1916,
PHZ_c1917,
PHZ_c1918
View Structure
6
2170457-2170640
(+)
FMN
2170724-2171234 (+)
PHZ_c1938
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
PHZ_c1938
Operon
DOOR ID:
463385
PHZ_c1938,
PHZ_c1939,
PHZ_c1940
View Structure
7
3325605-3325712
(-)
TPP
3323724-3325560 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PHZ_c2909
Single gene
DOOR ID:
2372385
PHZ_c2909
(thiC)
View Structure
8
3959412-3959494
(-)
ZMP-ZTP
3957792-3959385 (-)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
PHZ_c3499
Single gene
DOOR ID:
2372610
PHZ_c3499
(purH)
View Structure
Genome:
Phenylobacterium zucineum HLK1
(
NC_011144.1
);
Phylum:
Alphaproteobacteria
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