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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
156705-156816
(-)
TPP
154527-156456 (-)
MADE_1000720
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MADE_1000720
Operon
DOOR ID:
462157
MADE_1000695,
MADE_1000700,
MADE_1000705,
MADE_1000710,
MADE_1000715,
MADE_1000720
View Structure
2
780863-781126
(-)
cobalamin
778853-780776 (-)
MADE_1003755
TonB-denpendent receptor
MADE_1003755
Single gene
DOOR ID:
2369660
MADE_1003755
View Structure
3
1275803-1275906
(+)
TPP
1275961-1278052 (+)
MADE_1006295
TonB-denpendent receptor
MADE_1006295
Operon
DOOR ID:
462365
MADE_1006295,
MADE_1006300,
MADE_1006305,
MADE_1006310
View Structure
4
4227493-4227645
(-)
MOCO
4225934-4226528 (-)
molybdopterin biosynthesis protein B
MADE_1019345
Operon
DOOR ID:
462854
MADE_1019325,
MADE_1019330,
MADE_1019335,
MADE_1019340,
MADE_1019345,
MADE_1019350
View Structure
Genome:
Alteromonas macleodii str. 'Deep ecotype'
(
NC_011138.3
);
Phylum:
Gammaproteobacteria
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