RiboswitchDB

Genome: Streptococcus equi subsp. zooepidemicus MGCS10565 (NC_011134.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

735177-735273 (-)

TPP

734566-735130 (-)

Sez_0708

Thiamine transporter

Single gene

DOOR ID: 2368924

Sez_0708

2

812303-812421 (+)

preQ1-II

813021-814980 (+)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

Operon

DOOR ID: 461878

Sez_0784 (ligA),
Sez_0785,
Sez_0786 (pulA)

3

935395-935481 (-)

glycine

933931-935266 (-)

Sez_0890

Na(+)-linked D-alanine glycine permease

Single gene

DOOR ID: 2368991

Sez_0890

4

1677904-1678029 (-)

FMN

1677252-1677855 (-)

ypaA

Riboflavin transporter

Operon

DOOR ID: 462054

Sez_1630,
Sez_1631 (ypaA)

a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011134.1";i:2;s:50:"Streptococcus equi subsp. zooepidemicus MGCS10565 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"735177-735273";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"734566-735130";i:10;s:1:"-";i:11;s:8:"Sez_0708";i:12;s:20:"Thiamine transporter";i:13;s:8:"Sez_0708";i:14;s:11:"Single gene";i:15;s:7:"2368924";i:16;s:8:"Sez_0708";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011134.1";i:2;s:50:"Streptococcus equi subsp. zooepidemicus MGCS10565 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"812303-812421";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"813021-814980";i:10;s:1:"+";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:8:"Sez_0784";i:14;s:6:"Operon";i:15;s:6:"461878";i:16;s:38:"Sez_0784(ligA);Sez_0785;Sez_0786(pulA)";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011134.1";i:2;s:50:"Streptococcus equi subsp. zooepidemicus MGCS10565 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"935395-935481";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"933931-935266";i:10;s:1:"-";i:11;s:8:"Sez_0890";i:12;s:39:"Na(+)-linked D-alanine glycine permease";i:13;s:8:"Sez_0890";i:14;s:11:"Single gene";i:15;s:7:"2368991";i:16;s:8:"Sez_0890";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011134.1";i:2;s:50:"Streptococcus equi subsp. zooepidemicus MGCS10565 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1677904-1678029";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1677252-1677855";i:10;s:1:"-";i:11;s:4:"ypaA";i:12;s:22:"Riboflavin transporter";i:13;s:8:"Sez_1631";i:14;s:6:"Operon";i:15;s:6:"462054";i:16;s:23:"Sez_1630;Sez_1631(ypaA)";i:17;s:0:"";i:18;s:15:"View Structure
";}}