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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126644-126743
(-)
TPP
125628-126612 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
SeSA_A0119
Operon
DOOR ID:
460545
SeSA_A0117
(thiQ)
,
SeSA_A0118
(thiP)
,
SeSA_A0119
(tbpA)
,
SeSA_A0121,
SeSA_A0122
(sgrR)
View Structure
2
926606-926750
(+)
MOCO
927748-928261 (+)
moaB
Molybdenum cofactor biosynthesis protein B
SeSA_A0952
Operon
DOOR ID:
460700
SeSA_A0951
(moaA)
,
SeSA_A0952
(moaB)
,
SeSA_A0953
(moaC)
,
SeSA_A0954
(moaD)
,
SeSA_A0955
(moaE)
,
SeSA_A0956
View Structure
3
1909944-1910045
(+)
yybP-ykoY
1910156-1910723 (+)
SeSA_A1978
Probable manganese efflux pump MntP
SeSA_A1978
Single gene
DOOR ID:
2367184
SeSA_A1978
View Structure
4
2093427-2093602
(-)
cobalamin
2091950-2093330 (-)
cobB
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
SeSA_A2204
Operon
DOOR ID:
460906
SeSA_A2185
(cobT)
,
SeSA_A2186
(cobS)
,
SeSA_A2187
(cobU)
,
SeSA_A2188
(cobQ)
,
SeSA_A2189
(cbiO)
,
SeSA_A2190
(cbiQ)
,
SeSA_A2191,
SeSA_A2192
(cbiM)
,
SeSA_A2193
(cobI)
,
SeSA_A2194,
SeSA_A2195
(cobK)
,
SeSA_A2196
(cobJ)
,
SeSA_A2197,
SeSA_A2198
(cobM)
,
SeSA_A2199,
SeSA_A2200
(cbiE)
,
SeSA_A2201
(cbiD)
,
SeSA_A2202
(cbiC)
,
SeSA_A2203
(cbiB)
,
SeSA_A2204
(cobB)
View Structure
5
2262526-2262622
(-)
TPP
2261696-2262494 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SeSA_A2383
Operon
DOOR ID:
460929
SeSA_A2381,
SeSA_A2382
(thiD)
,
SeSA_A2383
(thiM)
View Structure
6
3266162-3266360
(-)
FMN
3265402-3266056 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SeSA_A3383
Single gene
DOOR ID:
2367109
SeSA_A3383
(ribB)
View Structure
7
4215063-4215256
(+)
cobalamin
4215321-4217166 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SeSA_A4341
Operon
DOOR ID:
461303
SeSA_A4341
(btuB)
,
SeSA_A4342
(murI)
View Structure
8
4248474-4248637
(-)
TPP
4246492-4248388 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SeSA_A4374
Operon
DOOR ID:
461309
SeSA_A4369
(thiH)
,
SeSA_A4370
(thiG)
,
SeSA_A4371
(thiS)
,
SeSA_A4372,
SeSA_A4373
(thiE)
,
SeSA_A4374
(thiC)
View Structure
9
4575501-4575613
(+)
Mg sensor
4575709-4578418 (+)
mgtA
Magnesium-translocating P-type ATPase
SeSA_A4709
Single gene
DOOR ID:
2368045
SeSA_A4709
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
(
NC_011094.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"126644-126743";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"125628-126612";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:10:"SeSA_A0119";i:14;s:6:"Operon";i:15;s:6:"460545";i:16;s:78:"SeSA_A0117(thiQ);SeSA_A0118(thiP);SeSA_A0119(tbpA);SeSA_A0121;SeSA_A0122(sgrR)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"926606-926750";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"927748-928261";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"SeSA_A0952";i:14;s:6:"Operon";i:15;s:6:"460700";i:16;s:95:"SeSA_A0951(moaA);SeSA_A0952(moaB);SeSA_A0953(moaC);SeSA_A0954(moaD);SeSA_A0955(moaE);SeSA_A0956";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1909944-1910045";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1910156-1910723";i:10;s:1:"+";i:11;s:10:"SeSA_A1978";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"SeSA_A1978";i:14;s:11:"Single gene";i:15;s:7:"2367184";i:16;s:10:"SeSA_A1978";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2093427-2093602";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2091950-2093330";i:10;s:1:"-";i:11;s:4:"cobB";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"SeSA_A2204";i:14;s:6:"Operon";i:15;s:6:"460906";i:16;s:315:"SeSA_A2185(cobT);SeSA_A2186(cobS);SeSA_A2187(cobU);SeSA_A2188(cobQ);SeSA_A2189(cbiO);SeSA_A2190(cbiQ);SeSA_A2191;SeSA_A2192(cbiM);SeSA_A2193(cobI);SeSA_A2194;SeSA_A2195(cobK);SeSA_A2196(cobJ);SeSA_A2197;SeSA_A2198(cobM);SeSA_A2199;SeSA_A2200(cbiE);SeSA_A2201(cbiD);SeSA_A2202(cbiC);SeSA_A2203(cbiB);SeSA_A2204(cobB)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2262526-2262622";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2261696-2262494";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"SeSA_A2383";i:14;s:6:"Operon";i:15;s:6:"460929";i:16;s:44:"SeSA_A2381;SeSA_A2382(thiD);SeSA_A2383(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3266162-3266360";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3265402-3266056";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"SeSA_A3383";i:14;s:11:"Single gene";i:15;s:7:"2367109";i:16;s:16:"SeSA_A3383(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4215063-4215256";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4215321-4217166";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"SeSA_A4341";i:14;s:6:"Operon";i:15;s:6:"461303";i:16;s:33:"SeSA_A4341(btuB);SeSA_A4342(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4248474-4248637";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4246492-4248388";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"SeSA_A4374";i:14;s:6:"Operon";i:15;s:6:"461309";i:16;s:95:"SeSA_A4369(thiH);SeSA_A4370(thiG);SeSA_A4371(thiS);SeSA_A4372;SeSA_A4373(thiE);SeSA_A4374(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011094.1";i:2;s:73:"Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4575501-4575613";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4575709-4578418";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:10:"SeSA_A4709";i:14;s:11:"Single gene";i:15;s:7:"2368045";i:16;s:16:"SeSA_A4709(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}