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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
121901-122000
(-)
TPP
120885-121869 (-)
tbpA
SeHA_C0114
Operon
DOOR ID:
459620
SeHA_C0112
(thiQ)
,
SeHA_C0113
(thiP)
,
SeHA_C0114
(tbpA)
,
SeHA_C0116,
SeHA_C0117
View Structure
2
918745-918889
(+)
MOCO
919887-920400 (+)
moaB
SeHA_C0929
Operon
DOOR ID:
459775
SeHA_C0928
(moaA)
,
SeHA_C0929
(moaB)
,
SeHA_C0930
(moaC)
,
SeHA_C0931
(moaD)
,
SeHA_C0932
(moaE)
,
SeHA_C0933
View Structure
3
1979739-1979840
(+)
yybP-ykoY
1979951-1980518 (+)
SeHA_C2035
Probable manganese efflux pump MntP
SeHA_C2035
Single gene
DOOR ID:
2365892
SeHA_C2035
View Structure
4
2161513-2161688
(-)
cobalamin
2160036-2161416 (-)
cobB
SeHA_C2257
Operon
DOOR ID:
459996
SeHA_C2237,
SeHA_C2238
(cobT)
,
SeHA_C2239
(cobS)
,
SeHA_C2240
(cobU)
,
SeHA_C2241
(cobQ)
,
SeHA_C2242
(cbiO)
,
SeHA_C2243
(cbiQ)
,
SeHA_C2244,
SeHA_C2245
(cbiM)
,
SeHA_C2246
(cobI)
,
SeHA_C2247,
SeHA_C2248
(cobK)
,
SeHA_C2249
(cobJ)
,
SeHA_C2250,
SeHA_C2251
(cobM)
,
SeHA_C2252,
SeHA_C2253
(cbiE)
,
SeHA_C2254
(cbiD)
,
SeHA_C2255
(cbiC)
,
SeHA_C2256
(cbiB)
,
SeHA_C2257
(cobB)
View Structure
5
2289466-2289562
(-)
TPP
2288636-2289434 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SeHA_C2379
Operon
DOOR ID:
460012
SeHA_C2377,
SeHA_C2378
(thiD)
,
SeHA_C2379
(thiM)
View Structure
6
3350770-3350968
(-)
FMN
3350010-3350664 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SeHA_C3446
Single gene
DOOR ID:
2365517
SeHA_C3446
(ribB)
View Structure
7
4344656-4344849
(+)
cobalamin
4344914-4346759 (+)
btuB
SeHA_C4459
Operon
DOOR ID:
460407
SeHA_C4459
(btuB)
,
SeHA_C4460
(murI)
View Structure
8
4377872-4378035
(-)
TPP
4375890-4377786 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SeHA_C4494
Operon
DOOR ID:
460413
SeHA_C4489
(thiH)
,
SeHA_C4490
(thiG)
,
SeHA_C4491
(thiS)
,
SeHA_C4492,
SeHA_C4493
(thiE)
,
SeHA_C4494
(thiC)
View Structure
9
4730488-4730600
(+)
Mg sensor
4730648-4733405 (+)
mgtA
SeHA_C4859
Single gene
DOOR ID:
2365522
SeHA_C4859
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
(
NC_011083.1
);
Phylum:
Gammaproteobacteria
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SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"121901-122000";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"120885-121869";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"SeHA_C0114";i:14;s:6:"Operon";i:15;s:6:"459620";i:16;s:72:"SeHA_C0112(thiQ);SeHA_C0113(thiP);SeHA_C0114(tbpA);SeHA_C0116;SeHA_C0117";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"918745-918889";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"919887-920400";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:10:"SeHA_C0929";i:14;s:6:"Operon";i:15;s:6:"459775";i:16;s:95:"SeHA_C0928(moaA);SeHA_C0929(moaB);SeHA_C0930(moaC);SeHA_C0931(moaD);SeHA_C0932(moaE);SeHA_C0933";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1979739-1979840";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1979951-1980518";i:10;s:1:"+";i:11;s:10:"SeHA_C2035";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"SeHA_C2035";i:14;s:11:"Single gene";i:15;s:7:"2365892";i:16;s:10:"SeHA_C2035";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2161513-2161688";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2160036-2161416";i:10;s:1:"-";i:11;s:4:"cobB";i:12;s:0:"";i:13;s:10:"SeHA_C2257";i:14;s:6:"Operon";i:15;s:6:"459996";i:16;s:326:"SeHA_C2237;SeHA_C2238(cobT);SeHA_C2239(cobS);SeHA_C2240(cobU);SeHA_C2241(cobQ);SeHA_C2242(cbiO);SeHA_C2243(cbiQ);SeHA_C2244;SeHA_C2245(cbiM);SeHA_C2246(cobI);SeHA_C2247;SeHA_C2248(cobK);SeHA_C2249(cobJ);SeHA_C2250;SeHA_C2251(cobM);SeHA_C2252;SeHA_C2253(cbiE);SeHA_C2254(cbiD);SeHA_C2255(cbiC);SeHA_C2256(cbiB);SeHA_C2257(cobB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2289466-2289562";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2288636-2289434";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"SeHA_C2379";i:14;s:6:"Operon";i:15;s:6:"460012";i:16;s:44:"SeHA_C2377;SeHA_C2378(thiD);SeHA_C2379(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3350770-3350968";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3350010-3350664";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"SeHA_C3446";i:14;s:11:"Single gene";i:15;s:7:"2365517";i:16;s:16:"SeHA_C3446(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4344656-4344849";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4344914-4346759";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"SeHA_C4459";i:14;s:6:"Operon";i:15;s:6:"460407";i:16;s:33:"SeHA_C4459(btuB);SeHA_C4460(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4377872-4378035";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4375890-4377786";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"SeHA_C4494";i:14;s:6:"Operon";i:15;s:6:"460413";i:16;s:95:"SeHA_C4489(thiH);SeHA_C4490(thiG);SeHA_C4491(thiS);SeHA_C4492;SeHA_C4493(thiE);SeHA_C4494(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011083.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4730488-4730600";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4730648-4733405";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:10:"SeHA_C4859";i:14;s:11:"Single gene";i:15;s:7:"2365522";i:16;s:16:"SeHA_C4859(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}