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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
965443-965552
(+)
SAM
965674-966967 (+)
Ppha_0929
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Ppha_0929
Operon
DOOR ID:
456934
Ppha_0929,
Ppha_0930
View Structure
2
1322650-1322893
(+)
cobalamin
1323162-1325118 (+)
Ppha_1262
TonB-dependent receptor
Ppha_1262
Single gene
DOOR ID:
2359896
Ppha_1262
View Structure
3
1878050-1878171
(+)
TPP
1878239-1879874 (+)
Ppha_1778
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ppha_1778
Single gene
DOOR ID:
2360092
Ppha_1778
View Structure
4
2715272-2715464
(-)
cobalamin
2715001-2715139 (-)
Ppha_2623
Ppha_2623
Single gene
DOOR ID:
2360361
Ppha_2623
View Structure
Genome:
Pelodictyon phaeoclathratiforme BU-1
(
NC_011060.1
);
Phylum:
Bacteroidetes/Chlorobi group
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