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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
351579-351793
(+)
cobalamin
352019-352799 (+)
Paes_0325
Paes_0325
Single gene
DOOR ID:
2358724
Paes_0325
View Structure
2
778657-778762
(+)
SAM
778877-780170 (+)
Paes_0729
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Paes_0729
Operon
DOOR ID:
456416
Paes_0729,
Paes_0730
View Structure
3
992728-992918
(+)
cobalamin
993083-995231 (+)
Paes_0906
Anaerobic ribonucleoside-triphosphate reductase
Paes_0906
Operon
DOOR ID:
456451
Paes_0906,
Paes_0907
View Structure
4
1110758-1110853
(-)
TPP
1109912-1110683 (-)
Paes_1007
Thiamine thiazole synthase
Paes_1007
Operon
DOOR ID:
456472
Paes_1004,
Paes_1005,
Paes_1006,
Paes_1007
View Structure
5
1377057-1377305
(-)
cobalamin
1374947-1376852 (-)
Paes_1271
TonB-dependent receptor plug
Paes_1271
Single gene
DOOR ID:
2359081
Paes_1271
View Structure
6
1379820-1380011
(-)
cobalamin
1377355-1379815 (-)
Paes_1272
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Paes_1272
Single gene
DOOR ID:
2359082
Paes_1272
View Structure
7
1382941-1383162
(-)
cobalamin
1380334-1382920 (-)
Paes_1274
TonB-dependent receptor plug
Paes_1274
Single gene
DOOR ID:
2359083
Paes_1274
View Structure
8
1397762-1397976
(-)
cobalamin
1396543-1397551 (-)
Paes_1281
Xylose isomerase domain protein TIM barrel
Paes_1281
Operon
DOOR ID:
456524
Paes_1275,
Paes_1276,
Paes_1277,
Paes_1278,
Paes_1279,
Paes_1280,
Paes_1281
View Structure
9
1398201-1398439
(+)
cobalamin
1398677-1400774 (+)
Paes_1282
TonB-dependent receptor
Paes_1282
Operon
DOOR ID:
456525
Paes_1282,
Paes_1283,
Paes_1284,
Paes_1285
View Structure
10
1422497-1422745
(-)
cobalamin
1420323-1422228 (-)
Paes_1301
TonB-dependent receptor
Paes_1301
Single gene
DOOR ID:
2359084
Paes_1301
View Structure
11
1699447-1699542
(+)
TPP
1699619-1701305 (+)
Paes_1561
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Paes_1561
Single gene
DOOR ID:
2359188
Paes_1561
View Structure
Genome:
Prosthecochloris aestuarii DSM 271
(
NC_011059.1
);
Phylum:
Bacteroidetes/Chlorobi group
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thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1377057-1377305";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1374947-1376852";i:10;s:1:"-";i:11;s:9:"Paes_1271";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Paes_1271";i:14;s:11:"Single gene";i:15;s:7:"2359081";i:16;s:9:"Paes_1271";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1379820-1380011";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1377355-1379815";i:10;s:1:"-";i:11;s:9:"Paes_1272";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Paes_1272";i:14;s:11:"Single gene";i:15;s:7:"2359082";i:16;s:9:"Paes_1272";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1382941-1383162";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1380334-1382920";i:10;s:1:"-";i:11;s:9:"Paes_1274";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Paes_1274";i:14;s:11:"Single gene";i:15;s:7:"2359083";i:16;s:9:"Paes_1274";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1397762-1397976";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1396543-1397551";i:10;s:1:"-";i:11;s:9:"Paes_1281";i:12;s:42:"Xylose isomerase domain protein TIM barrel";i:13;s:9:"Paes_1281";i:14;s:6:"Operon";i:15;s:6:"456524";i:16;s:69:"Paes_1275;Paes_1276;Paes_1277;Paes_1278;Paes_1279;Paes_1280;Paes_1281";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1398201-1398439";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1398677-1400774";i:10;s:1:"+";i:11;s:9:"Paes_1282";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Paes_1282";i:14;s:6:"Operon";i:15;s:6:"456525";i:16;s:39:"Paes_1282;Paes_1283;Paes_1284;Paes_1285";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1422497-1422745";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1420323-1422228";i:10;s:1:"-";i:11;s:9:"Paes_1301";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Paes_1301";i:14;s:11:"Single gene";i:15;s:7:"2359084";i:16;s:9:"Paes_1301";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011059.1";i:2;s:35:"Prosthecochloris aestuarii DSM 271 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1699447-1699542";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1699619-1701305";i:10;s:1:"+";i:11;s:9:"Paes_1561";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Paes_1561";i:14;s:11:"Single gene";i:15;s:7:"2359188";i:16;s:9:"Paes_1561";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
