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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
641709-641978
(+)
cobalamin
642212-645671 (+)
Cpar_0598
Vitamin B12-dependent ribonucleotide reductase
Cpar_0598
Operon
DOOR ID:
455308
Cpar_0597,
Cpar_0598
View Structure
2
664814-664922
(+)
SAM
665028-666318 (+)
Cpar_0621
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Cpar_0621
Operon
DOOR ID:
455316
Cpar_0621,
Cpar_0622
View Structure
3
1299678-1299912
(-)
cobalamin
1297584-1299462 (-)
Cpar_1184
TonB-dependent receptor
Cpar_1184
Operon
DOOR ID:
455427
Cpar_1171,
Cpar_1172,
Cpar_1173
(cobT)
,
Cpar_1174,
Cpar_1175,
Cpar_1176,
Cpar_1177,
Cpar_1178,
Cpar_1179
(cobD)
,
Cpar_1180,
Cpar_1181,
Cpar_1182,
Cpar_1183,
Cpar_1184
View Structure
4
1321191-1321408
(-)
cobalamin
1320808-1321165 (-)
Cpar_1207
Cpar_1207
Single gene
DOOR ID:
2356908
Cpar_1207
View Structure
5
1624397-1624611
(-)
cobalamin
1623204-1623996 (-)
Cpar_1485
Cpar_1485
Operon
DOOR ID:
455488
Cpar_1474,
Cpar_1475,
Cpar_1476,
Cpar_1477,
Cpar_1478,
Cpar_1479,
Cpar_1480,
Cpar_1481,
Cpar_1482,
Cpar_1483,
Cpar_1484,
Cpar_1485
View Structure
6
1686019-1686128
(+)
TPP
1686197-1687865 (+)
Cpar_1540
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Cpar_1540
Single gene
DOOR ID:
2357033
Cpar_1540
View Structure
Genome:
Chlorobaculum parvum NCIB 8327
(
NC_011027.1
);
Phylum:
Bacteroidetes/Chlorobi group
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